Literature DB >> 24078834

Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements.

Anton Barty1, Carl Caleman, Andrew Aquila, Nicusor Timneanu, Lukas Lomb, Thomas A White, Jakob Andreasson, David Arnlund, Saša Bajt, Thomas R M Barends, Miriam Barthelmess, Michael J Bogan, Christoph Bostedt, John D Bozek, Ryan Coffee, Nicola Coppola, Jan Davidsson, Daniel P Deponte, R Bruce Doak, Tomas Ekeberg, Veit Elser, Sascha W Epp, Benjamin Erk, Holger Fleckenstein, Lutz Foucar, Petra Fromme, Heinz Graafsma, Lars Gumprecht, Janos Hajdu, Christina Y Hampton, Robert Hartmann, Andreas Hartmann, Günter Hauser, Helmut Hirsemann, Peter Holl, Mark S Hunter, Linda Johansson, Stephan Kassemeyer, Nils Kimmel, Richard A Kirian, Mengning Liang, Filipe R N C Maia, Erik Malmerberg, Stefano Marchesini, Andrew V Martin, Karol Nass, Richard Neutze, Christian Reich, Daniel Rolles, Benedikt Rudek, Artem Rudenko, Howard Scott, Ilme Schlichting, Joachim Schulz, M Marvin Seibert, Robert L Shoeman, Raymond G Sierra, Heike Soltau, John C H Spence, Francesco Stellato, Stephan Stern, Lothar Strüder, Joachim Ullrich, X Wang, Georg Weidenspointner, Uwe Weierstall, Cornelia B Wunderer, Henry N Chapman.   

Abstract

X-ray free-electron lasers have enabled new approaches to the structural determination of protein crystals that are too small or radiation-sensitive for conventional analysis1. For sufficiently short pulses, diffraction is collected before significant changes occur to the sample, and it has been predicted that pulses as short as 10 fs may be required to acquire atomic-resolution structural information1-4. Here, we describe a mechanism unique to ultrafast, ultra-intense X-ray experiments that allows structural information to be collected from crystalline samples using high radiation doses without the requirement for the pulse to terminate before the onset of sample damage. Instead, the diffracted X-rays are gated by a rapid loss of crystalline periodicity, producing apparent pulse lengths significantly shorter than the duration of the incident pulse. The shortest apparent pulse lengths occur at the highest resolution, and our measurements indicate that current X-ray free-electron laser technology5 should enable structural determination from submicrometre protein crystals with atomic resolution.

Entities:  

Year:  2012        PMID: 24078834      PMCID: PMC3783007          DOI: 10.1038/nphoton.2011.297

Source DB:  PubMed          Journal:  Nat Photonics        ISSN: 1749-4885            Impact factor:   38.771


  16 in total

1.  Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.

Authors:  P Jordan; P Fromme; H T Witt; O Klukas; W Saenger; N Krauss
Journal:  Nature       Date:  2001-06-21       Impact factor: 49.962

2.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

3.  Soft-x-ray free-electron-laser interaction with materials.

Authors:  Stefan P Hau-Riege; Richard A London; Henry N Chapman; Magnus Bergh
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-10-17

4.  Subnanometer-scale measurements of the interaction of ultrafast soft x-ray free-electron-laser pulses with matter.

Authors:  Stefan P Hau-Riege; Henry N Chapman; Jacek Krzywinski; Ryszard Sobierajski; Sasa Bajt; Richard A London; Magnus Bergh; Carl Caleman; Robert Nietubyc; Libor Juha; Jaroslav Kuba; Eberhard Spiller; Sherry Baker; Richard Bionta; K Sokolowski Tinten; Nikola Stojanovic; Benjawan Kjornrattanawanich; Eric Gullikson; Elke Plönjes; Sven Toleikis; Thomas Tschentscher
Journal:  Phys Rev Lett       Date:  2007-04-04       Impact factor: 9.161

5.  Femtosecond time-delay X-ray holography.

Authors:  Henry N Chapman; Stefan P Hau-Riege; Michael J Bogan; Sasa Bajt; Anton Barty; Sébastien Boutet; Stefano Marchesini; Matthias Frank; Bruce W Woods; W Henry Benner; Richard A London; Urs Rohner; Abraham Szöke; Eberhard Spiller; Thomas Möller; Christoph Bostedt; David A Shapiro; Marion Kuhlmann; Rolf Treusch; Elke Plönjes; Florian Burmeister; Magnus Bergh; Carl Caleman; Gösta Huldt; M Marvin Seibert; Janos Hajdu
Journal:  Nature       Date:  2007-08-09       Impact factor: 49.962

6.  Saturated ablation in metal hydrides and acceleration of protons and deuterons to keV energies with a soft-x-ray laser.

Authors:  J Andreasson; B Iwan; A Andrejczuk; E Abreu; M Bergh; C Caleman; A J Nelson; S Bajt; J Chalupsky; H N Chapman; R R Fäustlin; V Hajkova; P A Heimann; B Hjörvarsson; L Juha; D Klinger; J Krzywinski; B Nagler; G K Pálsson; W Singer; M M Seibert; R Sobierajski; S Toleikis; T Tschentscher; S M Vinko; R W Lee; J Hajdu; N Tîmneanu
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-01-21

7.  Femtosecond protein nanocrystallography-data analysis methods.

Authors:  Richard A Kirian; Xiaoyu Wang; Uwe Weierstall; Kevin E Schmidt; John C H Spence; Mark Hunter; Petra Fromme; Thomas White; Henry N Chapman; James Holton
Journal:  Opt Express       Date:  2010-03-15       Impact factor: 3.894

8.  Model for the dynamics of a water cluster in an x-ray free electron laser beam.

Authors:  Magnus Bergh; Nicuşor Tîmneanu; David van der Spoel
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-11-11

9.  Experimental determination of the radiation dose limit for cryocooled protein crystals.

Authors:  Robin Leslie Owen; Enrique Rudiño-Piñera; Elspeth F Garman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-20       Impact factor: 11.205

Review 10.  The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules.

Authors:  R Henderson
Journal:  Q Rev Biophys       Date:  1995-05       Impact factor: 5.318

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  98 in total

1.  Room temperature femtosecond X-ray diffraction of photosystem II microcrystals.

Authors:  Jan Kern; Roberto Alonso-Mori; Julia Hellmich; Rosalie Tran; Johan Hattne; Hartawan Laksmono; Carina Glöckner; Nathaniel Echols; Raymond G Sierra; Jonas Sellberg; Benedikt Lassalle-Kaiser; Richard J Gildea; Pieter Glatzel; Ralf W Grosse-Kunstleve; Matthew J Latimer; Trevor A McQueen; Dörte DiFiore; Alan R Fry; Marc Messerschmidt; Alan Miahnahri; Donald W Schafer; M Marvin Seibert; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; William E White; Paul D Adams; Michael J Bogan; Sébastien Boutet; Garth J Williams; Johannes Messinger; Nicholas K Sauter; Athina Zouni; Uwe Bergmann; Junko Yano; Vittal K Yachandra
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

Review 2.  In vivo protein crystallization in combination with highly brilliant radiation sources offers novel opportunities for the structural analysis of post-translationally modified eukaryotic proteins.

Authors:  Michael Duszenko; Lars Redecke; Celestin Nzanzu Mudogo; Benjamin Philip Sommer; Stefan Mogk; Dominik Oberthuer; Christian Betzel
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-07-29       Impact factor: 1.056

3.  Observation of femtosecond X-ray interactions with matter using an X-ray-X-ray pump-probe scheme.

Authors:  Ichiro Inoue; Yuichi Inubushi; Takahiro Sato; Kensuke Tono; Tetsuo Katayama; Takashi Kameshima; Kanade Ogawa; Tadashi Togashi; Shigeki Owada; Yoshiyuki Amemiya; Takashi Tanaka; Toru Hara; Makina Yabashi
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-25       Impact factor: 11.205

Review 4.  Opportunities and Challenges for Biosensors and Nanoscale Analytical Tools for Pandemics: COVID-19.

Authors:  Nikhil Bhalla; Yuwei Pan; Zhugen Yang; Amir Farokh Payam
Journal:  ACS Nano       Date:  2020-06-26       Impact factor: 15.881

5.  Goniometer-based femtosecond crystallography with X-ray free electron lasers.

Authors:  Aina E Cohen; S Michael Soltis; Ana González; Laura Aguila; Roberto Alonso-Mori; Christopher O Barnes; Elizabeth L Baxter; Winnie Brehmer; Aaron S Brewster; Axel T Brunger; Guillermo Calero; Joseph F Chang; Matthieu Chollet; Paul Ehrensberger; Thomas L Eriksson; Yiping Feng; Johan Hattne; Britt Hedman; Michael Hollenbeck; James M Holton; Stephen Keable; Brian K Kobilka; Elena G Kovaleva; Andrew C Kruse; Henrik T Lemke; Guowu Lin; Artem Y Lyubimov; Aashish Manglik; Irimpan I Mathews; Scott E McPhillips; Silke Nelson; John W Peters; Nicholas K Sauter; Clyde A Smith; Jinhu Song; Hilary P Stevenson; Yingssu Tsai; Monarin Uervirojnangkoorn; Vladimir Vinetsky; Soichi Wakatsuki; William I Weis; Oleg A Zadvornyy; Oliver B Zeldin; Diling Zhu; Keith O Hodgson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-31       Impact factor: 11.205

6.  Grease matrix as a versatile carrier of proteins for serial crystallography.

Authors:  Michihiro Sugahara; Eiichi Mizohata; Eriko Nango; Mamoru Suzuki; Tomoyuki Tanaka; Tetsuya Masuda; Rie Tanaka; Tatsuro Shimamura; Yoshiki Tanaka; Chiyo Suno; Kentaro Ihara; Dongqing Pan; Keisuke Kakinouchi; Shigeru Sugiyama; Michio Murata; Tsuyoshi Inoue; Kensuke Tono; Changyong Song; Jaehyun Park; Takashi Kameshima; Takaki Hatsui; Yasumasa Joti; Makina Yabashi; So Iwata
Journal:  Nat Methods       Date:  2014-11-10       Impact factor: 28.547

7.  Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent.

Authors:  Takanori Nakane; Shinya Hanashima; Mamoru Suzuki; Haruka Saiki; Taichi Hayashi; Keisuke Kakinouchi; Shigeru Sugiyama; Satoshi Kawatake; Shigeru Matsuoka; Nobuaki Matsumori; Eriko Nango; Jun Kobayashi; Tatsuro Shimamura; Kanako Kimura; Chihiro Mori; Naoki Kunishima; Michihiro Sugahara; Yoko Takakyu; Shigeyuki Inoue; Tetsuya Masuda; Toshiaki Hosaka; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Makina Yabashi; Tsuyoshi Inoue; Osamu Nureki; So Iwata; Michio Murata; Eiichi Mizohata
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-31       Impact factor: 11.205

8.  Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser.

Authors:  Cornelius Gati; Dominik Oberthuer; Oleksandr Yefanov; Richard D Bunker; Francesco Stellato; Elaine Chiu; Shin-Mei Yeh; Andrew Aquila; Shibom Basu; Richard Bean; Kenneth R Beyerlein; Sabine Botha; Sébastien Boutet; Daniel P DePonte; R Bruce Doak; Raimund Fromme; Lorenzo Galli; Ingo Grotjohann; Daniel R James; Christopher Kupitz; Lukas Lomb; Marc Messerschmidt; Karol Nass; Kimberly Rendek; Robert L Shoeman; Dingjie Wang; Uwe Weierstall; Thomas A White; Garth J Williams; Nadia A Zatsepin; Petra Fromme; John C H Spence; Kenneth N Goldie; Johannes A Jehle; Peter Metcalf; Anton Barty; Henry N Chapman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-15       Impact factor: 11.205

9.  Nanoflow electrospinning serial femtosecond crystallography.

Authors:  Raymond G Sierra; Hartawan Laksmono; Jan Kern; Rosalie Tran; Johan Hattne; Roberto Alonso-Mori; Benedikt Lassalle-Kaiser; Carina Glöckner; Julia Hellmich; Donald W Schafer; Nathaniel Echols; Richard J Gildea; Ralf W Grosse-Kunstleve; Jonas Sellberg; Trevor A McQueen; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Christina Y Hampton; Dmitri Starodub; N Duane Loh; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; Pieter Glatzel; Despina Milathianaki; William E White; Paul D Adams; Garth J Williams; Sébastien Boutet; Athina Zouni; Johannes Messinger; Nicholas K Sauter; Uwe Bergmann; Junko Yano; Vittal K Yachandra; Michael J Bogan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-10-18

10.  Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode.

Authors:  Roberto Alonso-Mori; Jan Kern; Richard J Gildea; Dimosthenis Sokaras; Tsu-Chien Weng; Benedikt Lassalle-Kaiser; Rosalie Tran; Johan Hattne; Hartawan Laksmono; Julia Hellmich; Carina Glöckner; Nathaniel Echols; Raymond G Sierra; Donald W Schafer; Jonas Sellberg; Christopher Kenney; Ryan Herbst; Jack Pines; Philip Hart; Sven Herrmann; Ralf W Grosse-Kunstleve; Matthew J Latimer; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Petrus H Zwart; William E White; Paul D Adams; Michael J Bogan; Sébastien Boutet; Garth J Williams; Athina Zouni; Johannes Messinger; Pieter Glatzel; Nicholas K Sauter; Vittal K Yachandra; Junko Yano; Uwe Bergmann
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

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