Literature DB >> 23832194

Crystallization reports are the backbone of Acta Cryst. F, but do they have any spine?

Janet Newman1, Denis R Burton, Sofia Caria, Sebastien Desbois, Christine L Gee, Vincent J Fazio, Marc Kvansakul, Bevan Marshall, Grant Mills, Viviane Richter, Shane A Seabrook, Mingbo Wu, Thomas S Peat.   

Abstract

Crystallization of macromolecules is famously difficult. By knowing what has worked for others, researchers can ease the process, both in the case where the protein has already been crystallized and in the situation where more general guidelines are needed. The 264 crystallization communications published in Acta Crystallographica Section F in 2012 have been reviewed, and from this analysis some information about trends in crystallization has been gleaned. More importantly, it was found that there are several ways in which the utility of these communications could be increased: to make each individual paper a more complete crystallization record; and to provide a means for taking a snapshot of what the current `best practices' are in the field.

Keywords:  crystallization; crystallization communications

Mesh:

Substances:

Year:  2013        PMID: 23832194      PMCID: PMC3702311          DOI: 10.1107/S1744309113014152

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  9 in total

Review 1.  Light scattering as a diagnostic for protein crystal growth--a practical approach.

Authors:  W William Wilson
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

2.  Drug development: Raise standards for preclinical cancer research.

Authors:  C Glenn Begley; Lee M Ellis
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

3.  Publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution.

Authors:  David A Jacques; J Mitchell Guss; Dmitri I Svergun; Jill Trewhella
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-05-17

4.  Tapping the Protein Data Bank for crystallization information.

Authors:  Thomas S Peat; Jon A Christopher; Janet Newman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-11-19

5.  Citations in supplementary information are invisible.

Authors:  Frank Seeber
Journal:  Nature       Date:  2008-02-21       Impact factor: 49.962

6.  A comparison of salts for the crystallization of macromolecules.

Authors:  A McPherson
Journal:  Protein Sci       Date:  2001-02       Impact factor: 6.725

7.  Femtosecond X-ray protein nanocrystallography.

Authors:  Henry N Chapman; Petra Fromme; Anton Barty; Thomas A White; Richard A Kirian; Andrew Aquila; Mark S Hunter; Joachim Schulz; Daniel P DePonte; Uwe Weierstall; R Bruce Doak; Filipe R N C Maia; Andrew V Martin; Ilme Schlichting; Lukas Lomb; Nicola Coppola; Robert L Shoeman; Sascha W Epp; Robert Hartmann; Daniel Rolles; Artem Rudenko; Lutz Foucar; Nils Kimmel; Georg Weidenspointner; Peter Holl; Mengning Liang; Miriam Barthelmess; Carl Caleman; Sébastien Boutet; Michael J Bogan; Jacek Krzywinski; Christoph Bostedt; Saša Bajt; Lars Gumprecht; Benedikt Rudek; Benjamin Erk; Carlo Schmidt; André Hömke; Christian Reich; Daniel Pietschner; Lothar Strüder; Günter Hauser; Hubert Gorke; Joachim Ullrich; Sven Herrmann; Gerhard Schaller; Florian Schopper; Heike Soltau; Kai-Uwe Kühnel; Marc Messerschmidt; John D Bozek; Stefan P Hau-Riege; Matthias Frank; Christina Y Hampton; Raymond G Sierra; Dmitri Starodub; Garth J Williams; Janos Hajdu; Nicusor Timneanu; M Marvin Seibert; Jakob Andreasson; Andrea Rocker; Olof Jönsson; Martin Svenda; Stephan Stern; Karol Nass; Robert Andritschke; Claus-Dieter Schröter; Faton Krasniqi; Mario Bott; Kevin E Schmidt; Xiaoyu Wang; Ingo Grotjohann; James M Holton; Thomas R M Barends; Richard Neutze; Stefano Marchesini; Raimund Fromme; Sebastian Schorb; Daniela Rupp; Marcus Adolph; Tais Gorkhover; Inger Andersson; Helmut Hirsemann; Guillaume Potdevin; Heinz Graafsma; Björn Nilsson; John C H Spence
Journal:  Nature       Date:  2011-02-03       Impact factor: 49.962

8.  High-resolution protein structure determination by serial femtosecond crystallography.

Authors:  Sébastien Boutet; Lukas Lomb; Garth J Williams; Thomas R M Barends; Andrew Aquila; R Bruce Doak; Uwe Weierstall; Daniel P DePonte; Jan Steinbrener; Robert L Shoeman; Marc Messerschmidt; Anton Barty; Thomas A White; Stephan Kassemeyer; Richard A Kirian; M Marvin Seibert; Paul A Montanez; Chris Kenney; Ryan Herbst; Philip Hart; Jack Pines; Gunther Haller; Sol M Gruner; Hugh T Philipp; Mark W Tate; Marianne Hromalik; Lucas J Koerner; Niels van Bakel; John Morse; Wilfred Ghonsalves; David Arnlund; Michael J Bogan; Carl Caleman; Raimund Fromme; Christina Y Hampton; Mark S Hunter; Linda C Johansson; Gergely Katona; Christopher Kupitz; Mengning Liang; Andrew V Martin; Karol Nass; Lars Redecke; Francesco Stellato; Nicusor Timneanu; Dingjie Wang; Nadia A Zatsepin; Donald Schafer; James Defever; Richard Neutze; Petra Fromme; John C H Spence; Henry N Chapman; Ilme Schlichting
Journal:  Science       Date:  2012-05-31       Impact factor: 47.728

9.  On the need for an international effort to capture, share and use crystallization screening data.

Authors:  Janet Newman; Evan E Bolton; Jochen Müller-Dieckmann; Vincent J Fazio; D Travis Gallagher; David Lovell; Joseph R Luft; Thomas S Peat; David Ratcliffe; Roger A Sayle; Edward H Snell; Kerry Taylor; Pascal Vallotton; Sameer Velanker; Frank von Delft
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-02-15
  9 in total
  7 in total

1.  Cinder: keeping crystallographers app-y.

Authors:  Nicholas Rosa; Marko Ristic; Bevan Marshall; Janet Newman
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-06-26       Impact factor: 1.056

2.  A drunken search in crystallization space.

Authors:  Vincent J Fazio; Thomas S Peat; Janet Newman
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-09-30       Impact factor: 1.056

3.  The future of crystallization communications in Acta Cryst. F.

Authors:  Manfred S Weiss; Howard Einspahr
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-06-30

4.  Big changes are ahead--a new format for crystallization communications in Acta Cryst. F.

Authors:  Manfred S Weiss; Howard Einspahr
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-11-30

5.  The times they are a-changin' - news from Acta Crystallographica Section F.

Authors:  W N Hunter; Manfred S Weiss
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-11-28       Impact factor: 1.056

6.  Thiabendazole and Thiabendazole-Formic Acid Solvate: A Computational, Crystallographic, Spectroscopic and Thermal Study.

Authors:  Andreia M M Tabanez; Bernardo A Nogueira; Alberto Milani; M Ermelinda S Eusébio; José A Paixão; Hayrunnisa Nur Kabuk; Maria Jajuga; Gulce O Ildiz; Rui Fausto
Journal:  Molecules       Date:  2020-07-06       Impact factor: 4.411

Review 7.  Crystallization screening: the influence of history on current practice.

Authors:  Joseph R Luft; Janet Newman; Edward H Snell
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-06-27       Impact factor: 1.056

  7 in total

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