Literature DB >> 22286384

In vivo protein crystallization opens new routes in structural biology.

Rudolf Koopmann1, Karolina Cupelli, Lars Redecke, Karol Nass, Daniel P Deponte, Thomas A White, Francesco Stellato, Dirk Rehders, Mengning Liang, Jakob Andreasson, Andrew Aquila, Sasa Bajt, Miriam Barthelmess, Anton Barty, Michael J Bogan, Christoph Bostedt, Sébastien Boutet, John D Bozek, Carl Caleman, Nicola Coppola, Jan Davidsson, R Bruce Doak, Tomas Ekeberg, Sascha W Epp, Benjamin Erk, Holger Fleckenstein, Lutz Foucar, Heinz Graafsma, Lars Gumprecht, Janos Hajdu, Christina Y Hampton, Andreas Hartmann, Robert Hartmann, Günter Hauser, Helmut Hirsemann, Peter Holl, Mark S Hunter, Stephan Kassemeyer, Richard A Kirian, Lukas Lomb, Filipe R N C Maia, Nils Kimmel, Andrew V Martin, Marc Messerschmidt, Christian Reich, Daniel Rolles, Benedikt Rudek, Artem Rudenko, Ilme Schlichting, Joachim Schulz, M Marvin Seibert, Robert L Shoeman, Raymond G Sierra, Heike Soltau, Stephan Stern, Lothar Strüder, Nicusor Timneanu, Joachim Ullrich, Xiaoyu Wang, Georg Weidenspointner, Uwe Weierstall, Garth J Williams, Cornelia B Wunderer, Petra Fromme, John C H Spence, Thilo Stehle, Henry N Chapman, Christian Betzel, Michael Duszenko.   

Abstract

Protein crystallization in cells has been observed several times in nature. However, owing to their small size these crystals have not yet been used for X-ray crystallographic analysis. We prepared nano-sized in vivo-grown crystals of Trypanosoma brucei enzymes and applied the emerging method of free-electron laser-based serial femtosecond crystallography to record interpretable diffraction data. This combined approach will open new opportunities in structural systems biology.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22286384      PMCID: PMC3429599          DOI: 10.1038/nmeth.1859

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  19 in total

1.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

2.  The molecular organization of cypovirus polyhedra.

Authors:  Fasséli Coulibaly; Elaine Chiu; Keiko Ikeda; Sascha Gutmann; Peter W Haebel; Clemens Schulze-Briese; Hajime Mori; Peter Metcalf
Journal:  Nature       Date:  2007-03-01       Impact factor: 49.962

Review 3.  Strategies for crystallization and structure determination of very large macromolecular assemblies.

Authors:  Marcus Mueller; Simon Jenni; Nenad Ban
Journal:  Curr Opin Struct Biol       Date:  2007-10-25       Impact factor: 6.809

Review 4.  Small is beautiful: protein micro-crystallography.

Authors:  S Cusack; H Belrhali; A Bram; M Burghammer; A Perrakis; C Riekel
Journal:  Nat Struct Biol       Date:  1998-08

Review 5.  Control of NF-κB and inflammation by the unfolded protein response.

Authors:  Masanori Kitamura
Journal:  Int Rev Immunol       Date:  2011-02       Impact factor: 5.311

6.  Femtosecond protein nanocrystallography-data analysis methods.

Authors:  Richard A Kirian; Xiaoyu Wang; Uwe Weierstall; Kevin E Schmidt; John C H Spence; Mark Hunter; Petra Fromme; Thomas White; Henry N Chapman; James Holton
Journal:  Opt Express       Date:  2010-03-15       Impact factor: 3.894

7.  Novel non-peptidic vinylsulfones targeting the S2 and S3 subsites of parasite cysteine proteases.

Authors:  Clifford Bryant; Iain D Kerr; Moumita Debnath; Kenny K H Ang; Joseline Ratnam; Rafaela S Ferreira; Priyadarshini Jaishankar; DongMei Zhao; Michelle R Arkin; James H McKerrow; Linda S Brinen; Adam R Renslo
Journal:  Bioorg Med Chem Lett       Date:  2009-09-03       Impact factor: 2.823

8.  A cathepsin B-like protease is required for host protein degradation in Trypanosoma brucei.

Authors:  Zachary B Mackey; Theresa C O'Brien; Doron C Greenbaum; Rebecca B Blank; James H McKerrow
Journal:  J Biol Chem       Date:  2004-08-23       Impact factor: 5.157

Review 9.  Polyhedrin structure.

Authors:  G F Rohrmann
Journal:  J Gen Virol       Date:  1986-08       Impact factor: 3.891

10.  Crystal Structures of TbCatB and rhodesain, potential chemotherapeutic targets and major cysteine proteases of Trypanosoma brucei.

Authors:  Iain D Kerr; Peng Wu; Rachael Marion-Tsukamaki; Zachary B Mackey; Linda S Brinen
Journal:  PLoS Negl Trop Dis       Date:  2010-06-08
View more
  56 in total

1.  Room temperature femtosecond X-ray diffraction of photosystem II microcrystals.

Authors:  Jan Kern; Roberto Alonso-Mori; Julia Hellmich; Rosalie Tran; Johan Hattne; Hartawan Laksmono; Carina Glöckner; Nathaniel Echols; Raymond G Sierra; Jonas Sellberg; Benedikt Lassalle-Kaiser; Richard J Gildea; Pieter Glatzel; Ralf W Grosse-Kunstleve; Matthew J Latimer; Trevor A McQueen; Dörte DiFiore; Alan R Fry; Marc Messerschmidt; Alan Miahnahri; Donald W Schafer; M Marvin Seibert; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; William E White; Paul D Adams; Michael J Bogan; Sébastien Boutet; Garth J Williams; Johannes Messinger; Nicholas K Sauter; Athina Zouni; Uwe Bergmann; Junko Yano; Vittal K Yachandra
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

2.  Small is beautiful.

Authors:  Keith Moffat
Journal:  Nat Methods       Date:  2012-02-28       Impact factor: 28.547

Review 3.  In vivo protein crystallization in combination with highly brilliant radiation sources offers novel opportunities for the structural analysis of post-translationally modified eukaryotic proteins.

Authors:  Michael Duszenko; Lars Redecke; Celestin Nzanzu Mudogo; Benjamin Philip Sommer; Stefan Mogk; Dominik Oberthuer; Christian Betzel
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-07-29       Impact factor: 1.056

4.  Oxygen additions in serial femtosecond crystallographic protein structures.

Authors:  Jimin Wang
Journal:  Protein Sci       Date:  2016-07-26       Impact factor: 6.725

5.  Engineering a Genetically Encoded Magnetic Protein Crystal.

Authors:  Thomas L Li; Zegao Wang; He You; Qunxiang Ong; Vamsi J Varanasi; Mingdong Dong; Bai Lu; Sergiu P Paşca; Bianxiao Cui
Journal:  Nano Lett       Date:  2019-09-25       Impact factor: 11.189

6.  Grease matrix as a versatile carrier of proteins for serial crystallography.

Authors:  Michihiro Sugahara; Eiichi Mizohata; Eriko Nango; Mamoru Suzuki; Tomoyuki Tanaka; Tetsuya Masuda; Rie Tanaka; Tatsuro Shimamura; Yoshiki Tanaka; Chiyo Suno; Kentaro Ihara; Dongqing Pan; Keisuke Kakinouchi; Shigeru Sugiyama; Michio Murata; Tsuyoshi Inoue; Kensuke Tono; Changyong Song; Jaehyun Park; Takashi Kameshima; Takaki Hatsui; Yasumasa Joti; Makina Yabashi; So Iwata
Journal:  Nat Methods       Date:  2014-11-10       Impact factor: 28.547

Review 7.  Understanding pre-mRNA splicing through crystallography.

Authors:  Sara Espinosa; Lingdi Zhang; Xueni Li; Rui Zhao
Journal:  Methods       Date:  2017-05-12       Impact factor: 3.608

8.  Nanoflow electrospinning serial femtosecond crystallography.

Authors:  Raymond G Sierra; Hartawan Laksmono; Jan Kern; Rosalie Tran; Johan Hattne; Roberto Alonso-Mori; Benedikt Lassalle-Kaiser; Carina Glöckner; Julia Hellmich; Donald W Schafer; Nathaniel Echols; Richard J Gildea; Ralf W Grosse-Kunstleve; Jonas Sellberg; Trevor A McQueen; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Christina Y Hampton; Dmitri Starodub; N Duane Loh; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; Pieter Glatzel; Despina Milathianaki; William E White; Paul D Adams; Garth J Williams; Sébastien Boutet; Athina Zouni; Johannes Messinger; Nicholas K Sauter; Uwe Bergmann; Junko Yano; Vittal K Yachandra; Michael J Bogan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-10-18

9.  Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode.

Authors:  Roberto Alonso-Mori; Jan Kern; Richard J Gildea; Dimosthenis Sokaras; Tsu-Chien Weng; Benedikt Lassalle-Kaiser; Rosalie Tran; Johan Hattne; Hartawan Laksmono; Julia Hellmich; Carina Glöckner; Nathaniel Echols; Raymond G Sierra; Donald W Schafer; Jonas Sellberg; Christopher Kenney; Ryan Herbst; Jack Pines; Philip Hart; Sven Herrmann; Ralf W Grosse-Kunstleve; Matthew J Latimer; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Petrus H Zwart; William E White; Paul D Adams; Michael J Bogan; Sébastien Boutet; Garth J Williams; Athina Zouni; Johannes Messinger; Pieter Glatzel; Nicholas K Sauter; Vittal K Yachandra; Junko Yano; Uwe Bergmann
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

10.  XFELs open a new era in structural chemical biology.

Authors:  Petra Fromme
Journal:  Nat Chem Biol       Date:  2015-12       Impact factor: 15.040

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.