Literature DB >> 22619169

Histone monoubiquitylation position determines specificity and direction of enzymatic cross-talk with histone methyltransferases Dot1L and PRC2.

Sarah J Whitcomb1, Beat Fierz, Robert K McGinty, Matthew Holt, Takashi Ito, Tom W Muir, C David Allis.   

Abstract

It is well established that chromatin is a destination for signal transduction, affecting many DNA-templated processes. Histone proteins in particular are extensively post-translationally modified. We are interested in how the complex repertoire of histone modifications is coordinately regulated to generate meaningful combinations of "marks" at physiologically relevant genomic locations. One important mechanism is "cross-talk" between pre-existing histone post-translational modifications and enzymes that subsequently add or remove modifications on chromatin. Here, we use chemically defined "designer" nucleosomes to investigate novel enzymatic cross-talk relationships between the most abundant histone ubiquitylation sites, H2AK119ub and H2BK120ub, and two important histone methyltransferases, Dot1L and PRC2. Although the presence of H2Bub in nucleosomes greatly stimulated Dot1L methylation of H3K79, we found that H2Aub did not influence Dot1L activity. In contrast, we show that H2Aub inhibited PRC2 methylation of H3K27, but H2Bub did not influence PRC2 activity. Taken together, these results highlight how the position of nucleosome monoubiquitylation affects the specificity and direction of cross-talk with enzymatic activities on chromatin.

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Year:  2012        PMID: 22619169      PMCID: PMC3390646          DOI: 10.1074/jbc.M112.361824

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  45 in total

1.  The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote.

Authors:  Dirk Schübeler; David M MacAlpine; David Scalzo; Christiane Wirbelauer; Charles Kooperberg; Fred van Leeuwen; Daniel E Gottschling; Laura P O'Neill; Bryan M Turner; Jeffrey Delrow; Stephen P Bell; Mark Groudine
Journal:  Genes Dev       Date:  2004-06-01       Impact factor: 11.361

2.  Role of histone H2A ubiquitination in Polycomb silencing.

Authors:  Hengbin Wang; Liangjun Wang; Hediye Erdjument-Bromage; Miguel Vidal; Paul Tempst; Richard S Jones; Yi Zhang
Journal:  Nature       Date:  2004-09-22       Impact factor: 49.962

3.  Chromatin structure: a repeating unit of histones and DNA.

Authors:  R D Kornberg
Journal:  Science       Date:  1974-05-24       Impact factor: 47.728

4.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

5.  Histone 2B can be modified by the attachment of ubiquitin.

Authors:  M H West; W M Bonner
Journal:  Nucleic Acids Res       Date:  1980-10-24       Impact factor: 16.971

6.  DNA-histone interactions in nucleosomes.

Authors:  K E Van Holde; J R Allen; K Tatchell; W O Weischet; D Lohr
Journal:  Biophys J       Date:  1980-10       Impact factor: 4.033

7.  Proteolytic digestion studies of chromatin core-histone structure. Identification of a limit peptide of histone H2A.

Authors:  L Böhm; C Crane-Robinson; P Sautière
Journal:  Eur J Biochem       Date:  1980-05

8.  SUZ12 is required for both the histone methyltransferase activity and the silencing function of the EED-EZH2 complex.

Authors:  Ru Cao; Yi Zhang
Journal:  Mol Cell       Date:  2004-07-02       Impact factor: 17.970

9.  Active genes are tri-methylated at K4 of histone H3.

Authors:  Helena Santos-Rosa; Robert Schneider; Andrew J Bannister; Julia Sherriff; Bradley E Bernstein; N C Tolga Emre; Stuart L Schreiber; Jane Mellor; Tony Kouzarides
Journal:  Nature       Date:  2002-09-11       Impact factor: 49.962

10.  Isopeptide linkage between nonhistone and histone 2A polypeptides of chromosomal conjugate-protein A24.

Authors:  I L Goldknopf; H Busch
Journal:  Proc Natl Acad Sci U S A       Date:  1977-03       Impact factor: 11.205

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  19 in total

1.  Histone H2A ubiquitination inhibits the enzymatic activity of H3 lysine 36 methyltransferases.

Authors:  Gang Yuan; Ben Ma; Wen Yuan; Zhuqiang Zhang; Ping Chen; Xiaojun Ding; Li Feng; Xiaohua Shen; She Chen; Guohong Li; Bing Zhu
Journal:  J Biol Chem       Date:  2013-09-09       Impact factor: 5.157

Review 2.  Histones: at the crossroads of peptide and protein chemistry.

Authors:  Manuel M Müller; Tom W Muir
Journal:  Chem Rev       Date:  2014-10-20       Impact factor: 60.622

3.  Histone H2A monoubiquitination promotes histone H3 methylation in Polycomb repression.

Authors:  Reinhard Kalb; Sebastian Latwiel; H Irem Baymaz; Pascal W T C Jansen; Christoph W Müller; Michiel Vermeulen; Jürg Müller
Journal:  Nat Struct Mol Biol       Date:  2014-05-18       Impact factor: 15.369

Review 4.  Application of the protein semisynthesis strategy to the generation of modified chromatin.

Authors:  Matthew Holt; Tom Muir
Journal:  Annu Rev Biochem       Date:  2015-03-12       Impact factor: 23.643

Review 5.  Studies of biochemical crosstalk in chromatin with semisynthetic histones.

Authors:  Calvin Jon Antolin Leonen; Esha Upadhyay; Champak Chatterjee
Journal:  Curr Opin Chem Biol       Date:  2018-02-27       Impact factor: 8.822

6.  Chemical and biological tools for the preparation of modified histone proteins.

Authors:  Cecil J Howard; Ruixuan R Yu; Miranda L Gardner; John C Shimko; Jennifer J Ottesen
Journal:  Top Curr Chem       Date:  2015

Review 7.  Epigenetics: the fine-tuner in inflammatory bowel disease?

Authors:  Eleni Stylianou
Journal:  Curr Opin Gastroenterol       Date:  2013-07       Impact factor: 3.287

8.  Semisynthesis of ubiquitinated histone H2B with a native or nonhydrolyzable linkage.

Authors:  Michael Morgan; Muhammad Jbara; Ashraf Brik; Cynthia Wolberger
Journal:  Methods Enzymol       Date:  2019-02-26       Impact factor: 1.600

9.  ASH2L regulates ubiquitylation signaling to MLL: trans-regulation of H3 K4 methylation in higher eukaryotes.

Authors:  Lipeng Wu; Shirley Y Lee; Bo Zhou; Uyen T T Nguyen; Tom W Muir; Song Tan; Yali Dou
Journal:  Mol Cell       Date:  2013-02-28       Impact factor: 17.970

10.  JARID2 and AEBP2 regulate PRC2 in the presence of H2AK119ub1 and other histone modifications.

Authors:  Vignesh Kasinath; Curtis Beck; Paul Sauer; Simon Poepsel; Jennifer Kosmatka; Marco Faini; Daniel Toso; Ruedi Aebersold; Eva Nogales
Journal:  Science       Date:  2021-01-22       Impact factor: 47.728

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