Literature DB >> 29494828

Studies of biochemical crosstalk in chromatin with semisynthetic histones.

Calvin Jon Antolin Leonen1, Esha Upadhyay1, Champak Chatterjee2.   

Abstract

Reversible post-translational modifications of histone proteins in eukaryotic chromatin are closely tied to gene function and cellular development. Specific combinations of histone modifications, or marks, are implicated in distinct DNA-templated processes mediated by a range of chromatin-associated enzymes that install, erase and interpret the histone code. Mechanistic studies of the precise biochemical relationship between sets of marks and their effects on chromatin function are significantly complicated by the dynamic nature and heterogeneity of marks in cellular chromatin. Protein semisynthesis is a chemical technique that enables the piecewise assembly of uniformly and site-specifically modified histones in quantities sufficient for biophysical and biochemical analyses. Recent pioneering efforts in semisynthesis have yielded access to histones site-specifically modified by entire proteins, such as ubiquitin (Ub) and the small ubiquitin-like modifier (SUMO). Herein, we highlight key studies of biochemical crosstalk involving Ub and SUMO in chromatin that were enabled by histone semisynthesis.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29494828      PMCID: PMC6076846          DOI: 10.1016/j.cbpa.2018.02.005

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  64 in total

1.  The language of covalent histone modifications.

Authors:  B D Strahl; C D Allis
Journal:  Nature       Date:  2000-01-06       Impact factor: 49.962

2.  Histone sumoylation is associated with transcriptional repression.

Authors:  Yuzuru Shiio; Robert N Eisenman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-24       Impact factor: 11.205

Review 3.  The ubiquitin system, an immense realm.

Authors:  Alexander Varshavsky
Journal:  Annu Rev Biochem       Date:  2012       Impact factor: 23.643

4.  Auxiliary-mediated site-specific peptide ubiquitylation.

Authors:  Champak Chatterjee; Robert K McGinty; Jean-Philippe Pellois; Tom W Muir
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Histone H4-K16 acetylation controls chromatin structure and protein interactions.

Authors:  Michael Shogren-Knaak; Haruhiko Ishii; Jian-Min Sun; Michael J Pazin; James R Davie; Craig L Peterson
Journal:  Science       Date:  2006-02-10       Impact factor: 47.728

6.  Chemically ubiquitylated histone H2B stimulates hDot1L-mediated intranucleosomal methylation.

Authors:  Robert K McGinty; Jaehoon Kim; Champak Chatterjee; Robert G Roeder; Tom W Muir
Journal:  Nature       Date:  2008-04-30       Impact factor: 49.962

7.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

Review 8.  Quantitative proteomic analysis of histone modifications.

Authors:  He Huang; Shu Lin; Benjamin A Garcia; Yingming Zhao
Journal:  Chem Rev       Date:  2015-02-17       Impact factor: 60.622

9.  Forging isopeptide bonds using thiol-ene chemistry: site-specific coupling of ubiquitin molecules for studying the activity of isopeptidases.

Authors:  Ellen M Valkevich; Robert G Guenette; Nicholas A Sanchez; Yi-chen Chen; Ying Ge; Eric R Strieter
Journal:  J Am Chem Soc       Date:  2012-04-17       Impact factor: 15.419

10.  The site-specific installation of methyl-lysine analogs into recombinant histones.

Authors:  Matthew D Simon; Feixia Chu; Lisa R Racki; Cecile C de la Cruz; Alma L Burlingame; Barbara Panning; Geeta J Narlikar; Kevan M Shokat
Journal:  Cell       Date:  2007-03-09       Impact factor: 41.582

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  2 in total

Review 1.  Chemoenzymatic Semisynthesis of Proteins.

Authors:  Robert E Thompson; Tom W Muir
Journal:  Chem Rev       Date:  2019-11-27       Impact factor: 60.622

2.  Quantitative proteomics analysis to assess protein expression levels in the ovaries of pubescent goats.

Authors:  Ping Qin; Jing Ye; Xinbao Gong; Xu Yan; Maosen Lin; Tao Lin; Tong Liu; Hailing Li; Xiujuan Wang; Yanyun Zhu; Xiaoqian Li; Ya Liu; Yunsheng Li; Yinghui Ling; Xiaorong Zhang; Fugui Fang
Journal:  BMC Genomics       Date:  2022-07-13       Impact factor: 4.547

  2 in total

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