Literature DB >> 25784050

Application of the protein semisynthesis strategy to the generation of modified chromatin.

Matthew Holt1, Tom Muir.   

Abstract

Histone proteins are subject to a host of posttranslational modifications (PTMs) that modulate chromatin structure and function. Such control is achieved by the direct alteration of the intrinsic physical properties of the chromatin fiber or by regulating the recruitment and activity of a host of trans-acting nuclear factors. The sheer number of histone PTMs presents a formidable barrier to understanding the molecular mechanisms at the heart of epigenetic regulation of eukaryotic genomes. One aspect of this multifarious problem, namely how to access homogeneously modified chromatin for biochemical studies, is well suited to the sensibilities of the organic chemist. Indeed, recent years have witnessed a critical role for synthetic protein chemistry methods in generating the raw materials needed for studying how histone PTMs regulate chromatin biochemistry. This review focuses on what is arguably the most powerful, and widely employed, of these chemical strategies, namely histone semisynthesis via the chemical ligation of peptide fragments.

Entities:  

Keywords:  epigenetics; expressed protein ligation; histone; posttranslational modification

Mesh:

Substances:

Year:  2015        PMID: 25784050      PMCID: PMC5011971          DOI: 10.1146/annurev-biochem-060614-034429

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  128 in total

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3.  Free-radical-based, specific desulfurization of cysteine: a powerful advance in the synthesis of polypeptides and glycopolypeptides.

Authors:  Qian Wan; Samuel J Danishefsky
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Journal:  Protein Sci       Date:  1998-11       Impact factor: 6.725

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7.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

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Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

8.  Expressed protein ligation: a general method for protein engineering.

Authors:  T W Muir; D Sondhi; P A Cole
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

9.  The site-specific installation of methyl-lysine analogs into recombinant histones.

Authors:  Matthew D Simon; Feixia Chu; Lisa R Racki; Cecile C de la Cruz; Alma L Burlingame; Barbara Panning; Geeta J Narlikar; Kevan M Shokat
Journal:  Cell       Date:  2007-03-09       Impact factor: 41.582

10.  Integrative annotation of chromatin elements from ENCODE data.

Authors:  Michael M Hoffman; Jason Ernst; Steven P Wilder; Anshul Kundaje; Robert S Harris; Max Libbrecht; Belinda Giardine; Paul M Ellenbogen; Jeffrey A Bilmes; Ewan Birney; Ross C Hardison; Ian Dunham; Manolis Kellis; William Stafford Noble
Journal:  Nucleic Acids Res       Date:  2012-12-05       Impact factor: 16.971

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Review 3.  Reading chromatin signatures after DNA double-strand breaks.

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Review 4.  Chemical biology approaches for studying posttranslational modifications.

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Review 5.  Strategies for Generating Modified Nucleosomes: Applications within Structural Biology Studies.

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Journal:  ACS Chem Biol       Date:  2019-03-12       Impact factor: 5.100

6.  A Chemical Biology Approach to Reveal Sirt6-targeted Histone H3 Sites in Nucleosomes.

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7.  Chemical Synthesis of Phosphorylated Histone H2A at Tyr57 Reveals Insight into the Inhibition Mode of the SAGA Deubiquitinating Module.

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8.  Semisynthesis of ubiquitinated histone H2B with a native or nonhydrolyzable linkage.

Authors:  Michael Morgan; Muhammad Jbara; Ashraf Brik; Cynthia Wolberger
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9.  Total chemical synthesis of histones and their analogs, assisted by native chemical ligation and palladium complexes.

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Review 10.  The interplay between DNA and histone methylation: molecular mechanisms and disease implications.

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Journal:  EMBO Rep       Date:  2021-04-12       Impact factor: 8.807

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