Literature DB >> 22575889

Histone H4 K16Q mutation, an acetylation mimic, causes structural disorder of its N-terminal basic patch in the nucleosome.

Bing-Rui Zhou1, Hanqiao Feng, Rodolfo Ghirlando, Hidenori Kato, James Gruschus, Yawen Bai.   

Abstract

Histone tails and their posttranslational modifications play important roles in regulating the structure and dynamics of chromatin. For histone H4, the basic patch K(16)R(17)H(18)R(19) in the N-terminal tail modulates chromatin compaction and nucleosome sliding catalyzed by ATP-dependent ISWI chromatin remodeling enzymes while acetylation of H4 K16 affects both functions. The structural basis for the effects of this acetylation is unknown. Here, we investigated the conformation of histone tails in the nucleosome by solution NMR. We found that backbone amides of the N-terminal tails of histones H2A, H2B, and H3 are largely observable due to their conformational disorder. However, only residues 1-15 in H4 can be detected, indicating that residues 16-22 in the tails of both H4 histones fold onto the nucleosome core. Surprisingly, we found that K16Q mutation in H4, a mimic of K16 acetylation, leads to a structural disorder of the basic patch. Thus, our study suggests that the folded structure of the H4 basic patch in the nucleosome is important for chromatin compaction and nucleosome remodeling by ISWI enzymes while K16 acetylation affects both functions by causing structural disorder of the basic patch K(16)R(17)H(18)R(19). Published by Elsevier Ltd.

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Year:  2012        PMID: 22575889      PMCID: PMC3392517          DOI: 10.1016/j.jmb.2012.04.032

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  34 in total

1.  Chromatin fiber folding: requirement for the histone H4 N-terminal tail.

Authors:  Benedetta Dorigo; Thomas Schalch; Kerstin Bystricky; Timothy J Richmond
Journal:  J Mol Biol       Date:  2003-03-14       Impact factor: 5.469

Review 2.  The nucleosome: from genomic organization to genomic regulation.

Authors:  Sepideh Khorasanizadeh
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

3.  30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction.

Authors:  Philip J J Robinson; Woojin An; Andrew Routh; Fabrizio Martino; Lynda Chapman; Robert G Roeder; Daniela Rhodes
Journal:  J Mol Biol       Date:  2008-04-29       Impact factor: 5.469

Review 4.  The histone tails of the nucleosome.

Authors:  K Luger; T J Richmond
Journal:  Curr Opin Genet Dev       Date:  1998-04       Impact factor: 5.578

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF.

Authors:  A Hamiche; J G Kang; C Dennis; H Xiao; C Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Interaction of chromatin with NaCl and MgCl2. Solubility and binding studies, transition to and characterization of the higher-order structure.

Authors:  J Ausio; N Borochov; D Seger; H Eisenberg
Journal:  J Mol Biol       Date:  1984-08-15       Impact factor: 5.469

9.  The three-dimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon.

Authors:  R A Horowitz; D A Agard; J W Sedat; C L Woodcock
Journal:  J Cell Biol       Date:  1994-04       Impact factor: 10.539

10.  The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes.

Authors:  Lisa R Racki; Janet G Yang; Nariman Naber; Peretz D Partensky; Ashley Acevedo; Thomas J Purcell; Roger Cooke; Yifan Cheng; Geeta J Narlikar
Journal:  Nature       Date:  2009-12-24       Impact factor: 49.962

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  34 in total

1.  Structural insights into the histone H1-nucleosome complex.

Authors:  Bing-Rui Zhou; Hanqiao Feng; Hidenori Kato; Liang Dai; Yuedong Yang; Yaoqi Zhou; Yawen Bai
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

Review 2.  Nucleosome structure and dynamics are coming of age.

Authors:  Keda Zhou; Guillaume Gaullier; Karolin Luger
Journal:  Nat Struct Mol Biol       Date:  2018-12-10       Impact factor: 15.369

3.  Revisit of Reconstituted 30-nm Nucleosome Arrays Reveals an Ensemble of Dynamic Structures.

Authors:  Bing-Rui Zhou; Jiansheng Jiang; Rodolfo Ghirlando; Davood Norouzi; K N Sathish Yadav; Hanqiao Feng; Rui Wang; Ping Zhang; Victor Zhurkin; Yawen Bai
Journal:  J Mol Biol       Date:  2018-06-27       Impact factor: 5.469

4.  The role of histone tails in the nucleosome: a computational study.

Authors:  Jochen Erler; Ruihan Zhang; Loukas Petridis; Xiaolin Cheng; Jeremy C Smith; Jörg Langowski
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

5.  Reconstitution of Nucleosomes with Differentially Isotope-labeled Sister Histones.

Authors:  Stamatios Liokatis
Journal:  J Vis Exp       Date:  2017-03-26       Impact factor: 1.355

6.  The Influence of Ionic Environment and Histone Tails on Columnar Order of Nucleosome Core Particles.

Authors:  Nikolay V Berezhnoy; Ying Liu; Abdollah Allahverdi; Renliang Yang; Chun-Jen Su; Chuan-Fa Liu; Nikolay Korolev; Lars Nordenskiöld
Journal:  Biophys J       Date:  2016-04-26       Impact factor: 4.033

7.  A methyl-TROSY approach for NMR studies of high-molecular-weight DNA with application to the nucleosome core particle.

Authors:  Gili Abramov; Algirdas Velyvis; Enrico Rennella; Leo E Wong; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-26       Impact factor: 11.205

Review 8.  Strategies for Generating Modified Nucleosomes: Applications within Structural Biology Studies.

Authors:  Catherine A Musselman; Tatiana G Kutateladze
Journal:  ACS Chem Biol       Date:  2019-03-12       Impact factor: 5.100

9.  Chasing Tails: Cathepsin-L Improves Structural Analysis of Histones by HX-MS.

Authors:  Malvina Papanastasiou; James Mullahoo; Katherine C DeRuff; Besnik Bajrami; Ioannis Karageorgos; Stephen E Johnston; Ryan Peckner; Samuel A Myers; Steven A Carr; Jacob D Jaffe
Journal:  Mol Cell Proteomics       Date:  2019-08-13       Impact factor: 5.911

10.  Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling.

Authors:  Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2019-08-06
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