Literature DB >> 30817115

Strategies for Generating Modified Nucleosomes: Applications within Structural Biology Studies.

Catherine A Musselman1, Tatiana G Kutateladze2.   

Abstract

Post-translational modifications on histone proteins play critical roles in the regulation of chromatin structure and all DNA-templated processes. Accumulating evidence suggests that these covalent modifications can directly alter chromatin structure, or they can modulate activities of chromatin-modifying and -remodeling factors. Studying these modifications in the context of the nucleosome, the basic subunit of chromatin, is thus of great interest; however, the generation of specifically modified nucleosomes remains challenging. This is especially problematic for most structural biology approaches in which a large amount of material is often needed. Here we discuss the strategies currently available for generation of these substrates. We in particular focus on novel ideas and discuss challenges in the application to structural biology studies.

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Year:  2019        PMID: 30817115      PMCID: PMC6476189          DOI: 10.1021/acschembio.8b01049

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  77 in total

1.  Modulations of DNA Contacts by Linker Histones and Post-translational Modifications Determine the Mobility and Modifiability of Nucleosomal H3 Tails.

Authors:  Alexandra Stützer; Stamatios Liokatis; Anja Kiesel; Dirk Schwarzer; Remco Sprangers; Johannes Söding; Philipp Selenko; Wolfgang Fischle
Journal:  Mol Cell       Date:  2016-01-14       Impact factor: 17.970

Review 2.  Multivalent engagement of chromatin modifications by linked binding modules.

Authors:  Alexander J Ruthenburg; Haitao Li; Dinshaw J Patel; C David Allis
Journal:  Nat Rev Mol Cell Biol       Date:  2007-12       Impact factor: 94.444

3.  A systematic evaluation of the compatibility of histones containing methyl-lysine analogues with biochemical reactions.

Authors:  Guangshuai Jia; Weixiang Wang; Hong Li; Zhuo Mao; Gaihong Cai; Jian Sun; Hui Wu; Mo Xu; Peng Yang; Wen Yuan; She Chen; Bing Zhu
Journal:  Cell Res       Date:  2009-09-22       Impact factor: 25.617

4.  Genetically encoding N(epsilon)-methyl-L-lysine in recombinant histones.

Authors:  Duy P Nguyen; Maria M Garcia Alai; Prashant B Kapadnis; Heinz Neumann; Jason W Chin
Journal:  J Am Chem Soc       Date:  2009-10-14       Impact factor: 15.419

Review 5.  Regulation of nucleosome dynamics by histone modifications.

Authors:  Gabriel E Zentner; Steven Henikoff
Journal:  Nat Struct Mol Biol       Date:  2013-03       Impact factor: 15.369

Review 6.  Synthetic post-translational modification of histones.

Authors:  Simon Nadal; Ritu Raj; Shabaz Mohammed; Benjamin G Davis
Journal:  Curr Opin Chem Biol       Date:  2018-02-28       Impact factor: 8.822

7.  A chemical biology route to site-specific authentic protein modifications.

Authors:  Aerin Yang; Sura Ha; Jihye Ahn; Rira Kim; Sungyoon Kim; Younghoon Lee; Jaehoon Kim; Dieter Söll; Hee-Yoon Lee; Hee-Sung Park
Journal:  Science       Date:  2016-09-29       Impact factor: 47.728

Review 8.  Protein conjugation with genetically encoded unnatural amino acids.

Authors:  Chan Hyuk Kim; Jun Y Axup; Peter G Schultz
Journal:  Curr Opin Chem Biol       Date:  2013-05-09       Impact factor: 8.822

9.  Accessibility of the histone H3 tail in the nucleosome for binding of paired readers.

Authors:  Jovylyn Gatchalian; Xiaodong Wang; Jinzen Ikebe; Khan L Cox; Adam H Tencer; Yi Zhang; Nathaniel L Burge; Luo Di; Matthew D Gibson; Catherine A Musselman; Michael G Poirier; Hidetoshi Kono; Jeffrey J Hayes; Tatiana G Kutateladze
Journal:  Nat Commun       Date:  2017-11-14       Impact factor: 14.919

Review 10.  Total Chemical Synthesis of Modified Histones.

Authors:  Yun-Kun Qi; Hua-Song Ai; Yi-Ming Li; Baihui Yan
Journal:  Front Chem       Date:  2018-02-06       Impact factor: 5.221

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  1 in total

Review 1.  Histone Tail Conformations: A Fuzzy Affair with DNA.

Authors:  Mohamed Ghoneim; Harrison A Fuchs; Catherine A Musselman
Journal:  Trends Biochem Sci       Date:  2021-02-04       Impact factor: 13.807

  1 in total

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