Literature DB >> 30532059

Nucleosome structure and dynamics are coming of age.

Keda Zhou1, Guillaume Gaullier1,2, Karolin Luger3,4.   

Abstract

Since the first high-resolution structure of the nucleosome was reported in 1997, the available information on chromatin structure has increased very rapidly. Here, we review insights derived from cutting-edge biophysical and structural approaches applied to the study of nucleosome dynamics and nucleosome-binding factors, with a focus on the experimental advances driving the research. In addition, we highlight emerging challenges in nucleosome structural biology.

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Year:  2018        PMID: 30532059      PMCID: PMC7386248          DOI: 10.1038/s41594-018-0166-x

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  109 in total

1.  Structural analysis of the hexasome, lacking one histone H2A/H2B dimer from the conventional nucleosome.

Authors:  Yasuhiro Arimura; Hiroaki Tachiwana; Takashi Oda; Mamoru Sato; Hitoshi Kurumizaka
Journal:  Biochemistry       Date:  2012-04-02       Impact factor: 3.162

Review 2.  Putting CENP-A in its place.

Authors:  Madison E Stellfox; Aaron O Bailey; Daniel R Foltz
Journal:  Cell Mol Life Sci       Date:  2012-06-23       Impact factor: 9.261

Review 3.  Higher-order structures of chromatin: the elusive 30 nm fiber.

Authors:  David J Tremethick
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

4.  Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR.

Authors:  Hidenori Kato; Hugo van Ingen; Bing-Rui Zhou; Hanqiao Feng; Michael Bustin; Lewis E Kay; Yawen Bai
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

5.  Dynamics of nucleosomes assessed with time-lapse high-speed atomic force microscopy.

Authors:  Atsushi Miyagi; Toshio Ando; Yuri L Lyubchenko
Journal:  Biochemistry       Date:  2011-08-23       Impact factor: 3.162

Review 6.  The role of the nucleosome acidic patch in modulating higher order chromatin structure.

Authors:  Anna A Kalashnikova; Mary E Porter-Goff; Uma M Muthurajan; Karolin Luger; Jeffrey C Hansen
Journal:  J R Soc Interface       Date:  2013-02-27       Impact factor: 4.118

7.  Trajectory of nucleosomal linker DNA studied by fluorescence resonance energy transfer.

Authors:  K Tóth; N Brun; J Langowski
Journal:  Biochemistry       Date:  2001-06-12       Impact factor: 3.162

8.  A quantitative investigation of linker histone interactions with nucleosomes and chromatin.

Authors:  Alison E White; Aaron R Hieb; Karolin Luger
Journal:  Sci Rep       Date:  2016-01-11       Impact factor: 4.379

9.  Decoding the centromeric nucleosome through CENP-N.

Authors:  Satyakrishna Pentakota; Keda Zhou; Charlotte Smith; Stefano Maffini; Arsen Petrovic; Garry P Morgan; John R Weir; Ingrid R Vetter; Andrea Musacchio; Karolin Luger
Journal:  Elife       Date:  2017-12-27       Impact factor: 8.140

10.  Centromeres are maintained by fastening CENP-A to DNA and directing an arginine anchor-dependent nucleosome transition.

Authors:  Lucie Y Guo; Praveen Kumar Allu; Levani Zandarashvili; Kara L McKinley; Nikolina Sekulic; Jennine M Dawicki-McKenna; Daniele Fachinetti; Glennis A Logsdon; Ryan M Jamiolkowski; Don W Cleveland; Iain M Cheeseman; Ben E Black
Journal:  Nat Commun       Date:  2017-06-09       Impact factor: 14.919

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  77 in total

1.  Specialization of the chromatin remodeler RSC to mobilize partially-unwrapped nucleosomes.

Authors:  Alisha Schlichter; Margaret M Kasten; Timothy J Parnell; Bradley R Cairns
Journal:  Elife       Date:  2020-06-04       Impact factor: 8.140

2.  Variable impact of conformationally distinct DNA lesions on nucleosome structure and dynamics: Implications for nucleotide excision repair.

Authors:  Yuqin Cai; Nicholas E Geacintov; Suse Broyde
Journal:  DNA Repair (Amst)       Date:  2019-12-28

Review 3.  Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq.

Authors:  Nataliya Petryk; Nazaret Reverón-Gómez; Cristina González-Aguilera; Maria Dalby; Robin Andersson; Anja Groth
Journal:  Nat Protoc       Date:  2021-08-06       Impact factor: 13.491

4.  Multiplexed Imaging of Posttranslational Modifications of Endogenous Proteins in Live Cells.

Authors:  Yuko Sato; Hiroshi Kimura
Journal:  Methods Mol Biol       Date:  2021

Review 5.  Beads on a string-nucleosome array arrangements and folding of the chromatin fiber.

Authors:  Sandro Baldi; Philipp Korber; Peter B Becker
Journal:  Nat Struct Mol Biol       Date:  2020-02-10       Impact factor: 15.369

Review 6.  Picking a nucleosome lock: Sequence- and structure-specific recognition of the nucleosome.

Authors:  Matthew M Makowski; Guillaume Gaullier; Karolin Luger
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

Review 7.  Regulation of neuronal connectivity in the mammalian brain by chromatin remodeling.

Authors:  Jared V Goodman; Azad Bonni
Journal:  Curr Opin Neurobiol       Date:  2019-05-28       Impact factor: 6.627

Review 8.  Histone Tail Conformations: A Fuzzy Affair with DNA.

Authors:  Mohamed Ghoneim; Harrison A Fuchs; Catherine A Musselman
Journal:  Trends Biochem Sci       Date:  2021-02-04       Impact factor: 13.807

9.  Elucidating the influence of linker histone variants on chromatosome dynamics and energetics.

Authors:  Dustin C Woods; Jeff Wereszczynski
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

10.  Navigating the structure of COMPASS.

Authors:  Karolin Luger; Jonathan W Markert
Journal:  Elife       Date:  2020-02-24       Impact factor: 8.140

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