Literature DB >> 11724935

Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF.

A Hamiche1, J G Kang, C Dennis, H Xiao, C Wu.   

Abstract

Nucleosome Remodeling Factor (NURF) is an ATP-dependent nucleosome remodeling complex that alters chromatin structure by catalyzing nucleosome sliding, thereby exposing DNA sequences previously associated with nucleosomes. We systematically studied how the unstructured N-terminal residues of core histones (the N-terminal histone tails) influence nucleosome sliding. We used bacterially expressed Drosophila histones to reconstitute hybrid nucleosomes lacking one or more histone N-terminal tails. Unexpectedly, we found that removal of the N-terminal tail of histone H2B promoted uncatalyzed nucleosome sliding during native gel electrophoresis. Uncatalyzed nucleosome mobility was enhanced by additional removal of other histone tails but was not affected by hyperacetylation of core histones by p300. In addition, we found that the N-terminal tail of the histone H4 is specifically required for ATP-dependent catalysis of nucleosome sliding by NURF. Alanine scanning mutagenesis demonstrated that H4 residues 16-KRHR-19 are critical for the induction of nucleosome mobility, revealing a histone tail motif that regulates NURF activity. An exchange of histone tails between H4 and H3 impaired NURF-induced sliding of the mutant nucleosome, indicating that the location of the KRHR motif in relation to global nucleosome structure is functionally important. Our results provide functions for the N-terminal histone tails in regulating the mobility of nucleosomes.

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Year:  2001        PMID: 11724935      PMCID: PMC64679          DOI: 10.1073/pnas.251421398

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  81 in total

1.  Effects of core histone tail domains on the equilibrium constants for dynamic DNA site accessibility in nucleosomes.

Authors:  K J Polach; P T Lowary; J Widom
Journal:  J Mol Biol       Date:  2000-04-28       Impact factor: 5.469

2.  Purification and characterization of a human factor that assembles and remodels chromatin.

Authors:  G LeRoy; A Loyola; W S Lane; D Reinberg
Journal:  J Biol Chem       Date:  2000-05-19       Impact factor: 5.157

3.  The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p.

Authors:  J P Goldmark; T G Fazzio; P W Estep; G M Church; T Tsukiyama
Journal:  Cell       Date:  2000-10-27       Impact factor: 41.582

Review 4.  ATP-dependent chromatin remodeling: going mobile.

Authors:  C L Peterson
Journal:  FEBS Lett       Date:  2000-06-30       Impact factor: 4.124

5.  Active remodeling of somatic nuclei in egg cytoplasm by the nucleosomal ATPase ISWI.

Authors:  N Kikyo; P A Wade; D Guschin; H Ge; A P Wolffe
Journal:  Science       Date:  2000-09-29       Impact factor: 47.728

6.  A chromatin remodelling complex involved in transcription and DNA processing.

Authors:  X Shen; G Mizuguchi; A Hamiche; C Wu
Journal:  Nature       Date:  2000-08-03       Impact factor: 49.962

7.  HuCHRAC, a human ISWI chromatin remodelling complex contains hACF1 and two novel histone-fold proteins.

Authors:  R A Poot; G Dellaire; B B Hülsmann; M A Grimaldi; D F Corona; P B Becker; W A Bickmore; P D Varga-Weisz
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

8.  The ISWI chromatin-remodeling protein is required for gene expression and the maintenance of higher order chromatin structure in vivo.

Authors:  R Deuring; L Fanti; J A Armstrong; M Sarte; O Papoulas; M Prestel; G Daubresse; M Verardo; S L Moseley; M Berloco; T Tsukiyama; C Wu; S Pimpinelli; J W Tamkun
Journal:  Mol Cell       Date:  2000-02       Impact factor: 17.970

9.  Multiple ISWI ATPase complexes from xenopus laevis. Functional conservation of an ACF/CHRAC homolog.

Authors:  D Guschin; T M Geiman; N Kikyo; D J Tremethick; A P Wolffe; P A Wade
Journal:  J Biol Chem       Date:  2000-11-10       Impact factor: 5.157

10.  Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae.

Authors:  P Sudarsanam; V R Iyer; P O Brown; F Winston
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

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  74 in total

1.  A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI.

Authors:  Cedric R Clapier; Karl P Nightingale; Peter B Becker
Journal:  Nucleic Acids Res       Date:  2002-02-01       Impact factor: 16.971

2.  Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme.

Authors:  Iestyn Whitehouse; Chris Stockdale; Andrew Flaus; Mark D Szczelkun; Tom Owen-Hughes
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

3.  The INO80 ATP-dependent chromatin remodeling complex is a nucleosome spacing factor.

Authors:  Maheshi Udugama; Abdellah Sabri; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2010-12-06       Impact factor: 4.272

4.  The divalent cations Ca2+ and Mg2+ play specific roles in stabilizing histone-DNA interactions within nucleosomes that are partially redundant with the core histone tail domains.

Authors:  Zungyoon Yang; Jeffrey J Hayes
Journal:  Biochemistry       Date:  2011-10-31       Impact factor: 3.162

5.  The core histone N-terminal tail domains negatively regulate binding of transcription factor IIIA to a nucleosome containing a 5S RNA gene via a novel mechanism.

Authors:  Zungyoon Yang; Chunyang Zheng; Christophe Thiriet; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2005-01       Impact factor: 4.272

6.  Two distinct mechanisms of chromatin interaction by the Isw2 chromatin remodeling complex in vivo.

Authors:  Thomas G Fazzio; Marnie E Gelbart; Toshio Tsukiyama
Journal:  Mol Cell Biol       Date:  2005-11       Impact factor: 4.272

Review 7.  Chromatin, DNA methylation and neuron gene regulation--the purpose of the package.

Authors:  Rajiv P Sharma; Dennis R Grayson; Alessandro Guidotti; Erminio Costa
Journal:  J Psychiatry Neurosci       Date:  2005-07       Impact factor: 6.186

8.  Regulation of ISW2 by concerted action of histone H4 tail and extranucleosomal DNA.

Authors:  Weiwei Dang; Mohamedi N Kagalwala; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2006-10       Impact factor: 4.272

Review 9.  Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.

Authors:  Cedric R Clapier; Janet Iwasa; Bradley R Cairns; Craig L Peterson
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-17       Impact factor: 94.444

10.  The histone H4 basic patch regulates SAGA-mediated H2B deubiquitination and histone acetylation.

Authors:  Hashem A Meriesh; Andrew M Lerner; Mahesh B Chandrasekharan; Brian D Strahl
Journal:  J Biol Chem       Date:  2020-04-03       Impact factor: 5.157

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