Literature DB >> 28856755

Capturing the photo-signaling state of a photoreceptor in a steady-state fashion by binding a transition metal complex.

Pengyun Yu1,2, Lei Song3, Jun Qin3, Jianping Wang1,2.   

Abstract

Binding a small molecule to proteins causes conformational changes, but often to a limited extent. Here, we demonstrate that the interaction of a CO-releasing molecule (CORM3) with a photoreceptor photoactive yellow protein (PYP) drives large structural changes in the latter. The interaction of CORM3 and a mutant of PYP, Met100Ala, not only trigger the isomerization of its chromophore, p-coumaric acid, from its anionic trans configuration to a protonated cis configuration, but also increases the content of β-sheet at the cost of α-helix and random coil in the secondary structure of the protein. The CORM3 derived Met100Ala is found to highly resemble the signaling state, which is one of the key photo-intermediates of this photoactive protein, in both protein local conformation and chromophore configuration. The organometallic reagents hold promise as protein engineering tools. This work highlights a novel approach to structurally accessing short lived intermediates of proteins in a steady-state fashion.
© 2017 The Protein Society.

Entities:  

Keywords:  CORMs; carbonyl stretching; conformational change; protein intermediate

Mesh:

Substances:

Year:  2017        PMID: 28856755      PMCID: PMC5654893          DOI: 10.1002/pro.3284

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  52 in total

1.  When FT-IR spectroscopy meets X-ray crystallography.

Authors:  J Heberle; T Gensch
Journal:  Nat Struct Biol       Date:  2001-03

Review 2.  Structure and photoreaction of photoactive yellow protein, a structural prototype of the PAS domain superfamily.

Authors:  Yasushi Imamoto; Mikio Kataoka
Journal:  Photochem Photobiol       Date:  2007 Jan-Feb       Impact factor: 3.421

3.  pH Dependence of the photoactive yellow protein photocycle recovery reaction reveals a new late photocycle intermediate with a deprotonated chromophore.

Authors:  Johnny Hendriks; Klaas J Hellingwerf
Journal:  J Biol Chem       Date:  2008-12-17       Impact factor: 5.157

4.  Identification of six new photoactive yellow proteins--diversity and structure-function relationships in a bacterial blue light photoreceptor.

Authors:  Masato Kumauchi; Miwa T Hara; Page Stalcup; Aihua Xie; Wouter D Hoff
Journal:  Photochem Photobiol       Date:  2008-04-09       Impact factor: 3.421

5.  Global conformational changes upon receptor stimulation in photoactive yellow protein.

Authors:  W D Hoff; A Xie; I H Van Stokkum; X J Tang; J Gural; A R Kroon; K J Hellingwerf
Journal:  Biochemistry       Date:  1999-01-19       Impact factor: 3.162

Review 6.  CO and CO-releasing molecules in medicinal chemistry.

Authors:  Fabio Zobi
Journal:  Future Med Chem       Date:  2013-02       Impact factor: 3.808

7.  CORM-3 reactivity toward proteins: the crystal structure of a Ru(II) dicarbonyl-lysozyme complex.

Authors:  Teresa Santos-Silva; Abhik Mukhopadhyay; João D Seixas; Gonçalo J L Bernardes; Carlos C Romão; Maria J Romão
Journal:  J Am Chem Soc       Date:  2011-01-04       Impact factor: 15.419

8.  Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein.

Authors:  A Xie; W D Hoff; A R Kroon; K J Hellingwerf
Journal:  Biochemistry       Date:  1996-11-26       Impact factor: 3.162

9.  Small molecule induction of MSH2-dependent cell death suggests a vital role of mismatch repair proteins in cell death.

Authors:  Aksana Vasilyeva; Jill E Clodfelter; Brian Rector; Thomas Hollis; Karin D Scarpinato; Freddie R Salsbury
Journal:  DNA Repair (Amst)       Date:  2008-11-12

10.  Relating protein conformational changes to packing efficiency and disorder.

Authors:  Nitin Bhardwaj; Mark Gerstein
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

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