Literature DB >> 26007625

Applications of two-dimensional infrared spectroscopy.

Amanda L Le Sueur1, Rachel E Horness, Megan C Thielges.   

Abstract

Two-dimensional infrared (2D IR) spectroscopy has recently emerged as a powerful tool with applications in many areas of scientific research. The inherent high time resolution coupled with bond-specific spatial resolution of IR spectroscopy enable direct characterization of rapidly interconverting species and fast processes, even in complex systems found in chemistry and biology. In this minireview, we briefly outline the fundamental principles and experimental procedures of 2D IR spectroscopy. Using illustrative example studies, we explain the important features of 2D IR spectra and their capability to elucidate molecular structure and dynamics. Primarily, this minireview aims to convey the scope and potential of 2D IR spectroscopy by highlighting select examples of recent applications including the use of innate or introduced vibrational probes for the study of nucleic acids, peptides/proteins, and materials.

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Year:  2015        PMID: 26007625      PMCID: PMC4500793          DOI: 10.1039/c5an00558b

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  121 in total

1.  The effect of point mutation on the equilibrium structural fluctuations of ferric Myoglobin.

Authors:  Katrin Adamczyk; Marco Candelaresi; Rafal Kania; Kirsty Robb; Cesar Bellota-Antón; Gregory M Greetham; Mark R Pollard; Michael Towrie; Anthony W Parker; Paul A Hoskisson; Nicholas P Tucker; Neil T Hunt
Journal:  Phys Chem Chem Phys       Date:  2012-04-23       Impact factor: 3.676

2.  Protein identification and quantification by two-dimensional infrared spectroscopy: implications for an all-optical proteomic platform.

Authors:  Frédéric Fournier; Elizabeth M Gardner; Darek A Kedra; Paul M Donaldson; Rui Guo; Sarah A Butcher; Ian R Gould; Keith R Willison; David R Klug
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-01       Impact factor: 11.205

3.  Strong intermolecular vibrational coupling through cyclic hydrogen-bonded structures revealed by ultrafast continuum mid-IR spectroscopy.

Authors:  Ashley M Stingel; Carmella Calabrese; Poul B Petersen
Journal:  J Phys Chem B       Date:  2013-09-25       Impact factor: 2.991

4.  A salt-bridge structure in solution revealed by 2D-IR spectroscopy.

Authors:  Adriana Huerta-Viga; Sérgio R Domingos; Saeed Amirjalayer; Sander Woutersen
Journal:  Phys Chem Chem Phys       Date:  2014-08-14       Impact factor: 3.676

5.  Tidal surge in the M2 proton channel, sensed by 2D IR spectroscopy.

Authors:  Ayanjeet Ghosh; Jade Qiu; William F DeGrado; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

6.  Protein dynamics studied with ultrafast two-dimensional infrared vibrational echo spectroscopy.

Authors:  Megan C Thielges; Michael D Fayer
Journal:  Acc Chem Res       Date:  2012-03-20       Impact factor: 22.384

7.  Ribonuclease S dynamics measured using a nitrile label with 2D IR vibrational echo spectroscopy.

Authors:  Sayan Bagchi; Steven G Boxer; Michael D Fayer
Journal:  J Phys Chem B       Date:  2012-03-23       Impact factor: 2.991

8.  Dynamics of water at the interface in reverse micelles: measurements of spectral diffusion with two-dimensional infrared vibrational echoes.

Authors:  Emily E Fenn; Daryl B Wong; Chiara H Giammanco; M D Fayer
Journal:  J Phys Chem B       Date:  2011-09-22       Impact factor: 2.991

9.  Dynamics of Functionalized Surface Molecular Monolayers Studied with Ultrafast Infrared Vibrational Spectroscopy.

Authors:  Daniel E Rosenfeld; Jun Nishida; Chang Yan; Zsolt Gengeliczki; Brian J Smith; Michael D Fayer
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2012-11-08       Impact factor: 4.126

10.  Cation effects on rotational dynamics of anions and water molecules in alkali (Li+, Na+, K+, Cs+) thiocyanate (SCN-) aqueous solutions.

Authors:  Hongtao Bian; Hailong Chen; Qiang Zhang; Jiebo Li; Xiewen Wen; Wei Zhuang; Junrong Zheng
Journal:  J Phys Chem B       Date:  2013-06-21       Impact factor: 2.991

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  16 in total

1.  Non-Additive Effects of Binding Site Mutations in Calmodulin.

Authors:  Sean C Edington; D Brent Halling; Suzanna M Bennett; Thomas R Middendorf; Richard W Aldrich; Carlos R Baiz
Journal:  Biochemistry       Date:  2019-06-04       Impact factor: 3.162

2.  Transparent window 2D IR spectroscopy of proteins.

Authors:  Megan C Thielges
Journal:  J Chem Phys       Date:  2021-07-28       Impact factor: 3.488

Review 3.  A molecular engineering toolbox for the structural biologist.

Authors:  Galia T Debelouchina; Tom W Muir
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

4.  Extended timescale 2D IR probes of proteins: p-cyanoselenophenylalanine.

Authors:  S Ramos; K J Scott; R E Horness; A L Le Sueur; M C Thielges
Journal:  Phys Chem Chem Phys       Date:  2017-04-12       Impact factor: 3.676

5.  Efficient Total Chemical Synthesis of (13) C=(18) O Isotopomers of Human Insulin for Isotope-Edited FTIR.

Authors:  Balamurugan Dhayalan; Ann Fitzpatrick; Kalyaneswar Mandal; Jonathan Whittaker; Michael A Weiss; Andrei Tokmakoff; Stephen B H Kent
Journal:  Chembiochem       Date:  2016-02-16       Impact factor: 3.164

6.  Site-Specific Peptide Probes Detect Buried Water in a Lipid Membrane.

Authors:  Jennifer C Flanagan; Carlos R Baiz
Journal:  Biophys J       Date:  2019-03-19       Impact factor: 4.033

7.  Coordination to lanthanide ions distorts binding site conformation in calmodulin.

Authors:  Sean C Edington; Andrea Gonzalez; Thomas R Middendorf; D Brent Halling; Richard W Aldrich; Carlos R Baiz
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-15       Impact factor: 11.205

Review 8.  Equilibrium versus Nonequilibrium Peptide Dynamics: Insights into Transient 2D IR Spectroscopy.

Authors:  David G Hogle; Amy R Cunningham; Matthew J Tucker
Journal:  J Phys Chem B       Date:  2018-08-10       Impact factor: 2.991

9.  Two-Dimensional Infrared Study of Vibrational Coupling between Azide and Nitrile Reporters in a RNA Nucleoside.

Authors:  Andrew J Schmitz; David G Hogle; Xin Sonia Gai; Edward E Fenlon; Scott H Brewer; Matthew J Tucker
Journal:  J Phys Chem B       Date:  2016-08-24       Impact factor: 2.991

10.  Dynamics underlying hydroxylation selectivity of cytochrome P450cam.

Authors:  Sashary Ramos; Claire C Mammoser; Katherine E Thibodeau; Megan C Thielges
Journal:  Biophys J       Date:  2021-02-03       Impact factor: 4.033

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