Literature DB >> 22514181

An integrated high-throughput data acquisition system for biological solution X-ray scattering studies.

Anne Martel1, Ping Liu, Thomas M Weiss, Marc Niebuhr, Hiro Tsuruta.   

Abstract

A fully automated high-throughput solution X-ray scattering data collection system has been developed for protein structure studies at beamline 4-2 of the Stanford Synchrotron Radiation Lightsource. It is composed of a thin-wall quartz capillary cell, a syringe needle assembly on an XYZ positioning arm for sample delivery, a water-cooled sample rack and a computer-controlled fluid dispenser. It is controlled by a specifically developed software component built into the standard beamline control program Blu-Ice/DCS. The integrated system is intuitive and very simple to use, and enables experimenters to customize data collection strategy in a timely fashion in concert with an automated data processing program. The system also allows spectrophotometric determination of protein concentration for each sample aliquot in the beam via an in situ UV absorption spectrometer. A single set of solution scattering measurements requires a 20-30 µl sample aliquot and takes typically 3.5 min, including an extensive capillary cleaning cycle. Over 98.5% of measurements are valid and free from artefacts commonly caused by air-bubble contamination. The sample changer, which is compact and light, facilitates effortless switching with other sample-handling devices required for other types of non-crystalline X-ray scattering experiments.

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Year:  2012        PMID: 22514181      PMCID: PMC3329959          DOI: 10.1107/S0909049512008072

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  7 in total

1.  Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines.

Authors:  Timothy M McPhillips; Scott E McPhillips; Hsiu-Ju Chiu; Aina E Cohen; Ashley M Deacon; Paul J Ellis; Elspeth Garman; Ana Gonzalez; Nicholas K Sauter; R Paul Phizackerley; S Michael Soltis; Peter Kuhn
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

2.  Liquid-chromatography-coupled SAXS for accurate sizing of aggregating proteins.

Authors:  Elizabeth Mathew; Ahmed Mirza; Nick Menhart
Journal:  J Synchrotron Radiat       Date:  2004-06-23       Impact factor: 2.616

Review 3.  X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution.

Authors:  Christopher D Putnam; Michal Hammel; Greg L Hura; John A Tainer
Journal:  Q Rev Biophys       Date:  2007-08       Impact factor: 5.318

Review 4.  Experimental approaches for solution X-ray scattering and fiber diffraction.

Authors:  H Tsuruta; T C Irving
Journal:  Curr Opin Struct Biol       Date:  2008-09-29       Impact factor: 6.809

5.  Radiation damage to a protein solution, detected by synchrotron X-ray small-angle scattering: dose-related considerations and suppression by cryoprotectants.

Authors:  Shigeo Kuwamoto; Shuji Akiyama; Tetsuro Fujisawa
Journal:  J Synchrotron Radiat       Date:  2004-10-22       Impact factor: 2.616

6.  Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS).

Authors:  Greg L Hura; Angeli L Menon; Michal Hammel; Robert P Rambo; Farris L Poole; Susan E Tsutakawa; Francis E Jenney; Scott Classen; Kenneth A Frankel; Robert C Hopkins; Sung-Jae Yang; Joseph W Scott; Bret D Dillard; Michael W W Adams; John A Tainer
Journal:  Nat Methods       Date:  2009-07-20       Impact factor: 28.547

7.  Automated sample-changing robot for solution scattering experiments at the EMBL Hamburg SAXS station X33.

Authors:  A R Round; D Franke; S Moritz; R Huchler; M Fritsche; D Malthan; R Klaering; D I Svergun; M Roessle
Journal:  J Appl Crystallogr       Date:  2008-08-16       Impact factor: 3.304

  7 in total
  37 in total

1.  Structural insight and flexible features of NS5 proteins from all four serotypes of Dengue virus in solution.

Authors:  Wuan Geok Saw; Giancarlo Tria; Ardina Grüber; Malathy Sony Subramanian Manimekalai; Yongqian Zhao; Arun Chandramohan; Ganesh Srinivasan Anand; Tsutomu Matsui; Thomas M Weiss; Subhash G Vasudevan; Gerhard Grüber
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-10-31

2.  High-throughput SAXS for the characterization of biomolecules in solution: a practical approach.

Authors:  Kevin N Dyer; Michal Hammel; Robert P Rambo; Susan E Tsutakawa; Ivan Rodic; Scott Classen; John A Tainer; Greg L Hura
Journal:  Methods Mol Biol       Date:  2014

Review 3.  Emerging applications of small angle solution scattering in structural biology.

Authors:  Barnali N Chaudhuri
Journal:  Protein Sci       Date:  2015-02-12       Impact factor: 6.725

Review 4.  The role of small-angle scattering in structure-based screening applications.

Authors:  Po-Chia Chen; Janosch Hennig
Journal:  Biophys Rev       Date:  2018-10-10

5.  α-Catenin Structure and Nanoscale Dynamics in Solution and in Complex with F-Actin.

Authors:  Iain D Nicholl; Tsutomu Matsui; Thomas M Weiss; Christopher B Stanley; William T Heller; Anne Martel; Bela Farago; David J E Callaway; Zimei Bu
Journal:  Biophys J       Date:  2018-07-11       Impact factor: 4.033

6.  Breaking the radiation damage limit with Cryo-SAXS.

Authors:  Steve P Meisburger; Matthew Warkentin; Huimin Chen; Jesse B Hopkins; Richard E Gillilan; Lois Pollack; Robert E Thorne
Journal:  Biophys J       Date:  2013-01-08       Impact factor: 4.033

7.  Assembly and Molecular Architecture of the Phosphoinositide 3-Kinase p85α Homodimer.

Authors:  Jaclyn LoPiccolo; Seung Joong Kim; Yi Shi; Bin Wu; Haiyan Wu; Brian T Chait; Robert H Singer; Andrej Sali; Michael Brenowitz; Anne R Bresnick; Jonathan M Backer
Journal:  J Biol Chem       Date:  2015-10-16       Impact factor: 5.157

8.  Quantifying radiation damage in biomolecular small-angle X-ray scattering.

Authors:  Jesse B Hopkins; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2016-05-04       Impact factor: 3.304

9.  De Novo Design and Implementation of a Tandem Acyl Carrier Protein Domain in a Type I Modular Polyketide Synthase.

Authors:  Zilong Wang; Saket R Bagde; Gerardo Zavala; Tsutomu Matsui; Xi Chen; Chu-Young Kim
Journal:  ACS Chem Biol       Date:  2018-10-24       Impact factor: 5.100

10.  Prion Protein-Antibody Complexes Characterized by Chromatography-Coupled Small-Angle X-Ray Scattering.

Authors:  Lester Carter; Seung Joong Kim; Dina Schneidman-Duhovny; Jan Stöhr; Guillaume Poncet-Montange; Thomas M Weiss; Hiro Tsuruta; Stanley B Prusiner; Andrej Sali
Journal:  Biophys J       Date:  2015-08-18       Impact factor: 4.033

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