Literature DB >> 18801437

Experimental approaches for solution X-ray scattering and fiber diffraction.

H Tsuruta1, T C Irving.   

Abstract

X-ray scattering and diffraction from non-crystalline systems have gained renewed interest in recent years, as focus shifts from the structural chemistry information gained by high-resolution studies to the context of structural physiology at larger length scales. Such techniques permit the study of isolated macromolecules as well as highly organized macromolecular assemblies as a whole under near-physiological conditions. Time-resolved approaches, made possible by advanced synchrotron instrumentation, add a crucial dimension to many of these investigations. This article reviews experimental approaches in non-crystalline X-ray scattering and diffraction that may be used to illuminate important scientific questions such as protein/nucleic acid folding and structure-function relationships in large macromolecular assemblies.

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Year:  2008        PMID: 18801437      PMCID: PMC2659704          DOI: 10.1016/j.sbi.2008.08.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  46 in total

Review 1.  Ageing and vision: structure, stability and function of lens crystallins.

Authors:  Hans Bloemendal; Wilfried de Jong; Rainer Jaenicke; Nicolette H Lubsen; Christine Slingsby; Annette Tardieu
Journal:  Prog Biophys Mol Biol       Date:  2004-11       Impact factor: 3.667

2.  Microfibrillar structure of type I collagen in situ.

Authors:  Joseph P R O Orgel; Thomas C Irving; Andrew Miller; Tim J Wess
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-02       Impact factor: 11.205

3.  Molecular dynamics of cyclically contracting insect flight muscle in vivo.

Authors:  Michael Dickinson; Gerrie Farman; Mark Frye; Tanya Bekyarova; David Gore; David Maughan; Thomas Irving
Journal:  Nature       Date:  2005-01-20       Impact factor: 49.962

4.  X-ray diffraction "fingerprinting" of DNA structure in solution for quantitative evaluation of molecular dynamics simulation.

Authors:  Xiaobing Zuo; Guanglei Cui; Kenneth M Merz; Ligang Zhang; Frederick D Lewis; David M Tiede
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

Review 5.  Molecular dimensions and their distributions in early folding intermediates.

Authors:  Osman Bilsel; C Robert Matthews
Journal:  Curr Opin Struct Biol       Date:  2006-01-24       Impact factor: 6.809

Review 6.  Diffraction to study protein and peptide assemblies.

Authors:  O Sumner Makin; Pawel Sikorski; Louise C Serpell
Journal:  Curr Opin Chem Biol       Date:  2006-08-23       Impact factor: 8.822

7.  Cooperative deformation of mineral and collagen in bone at the nanoscale.

Authors:  Himadri S Gupta; Jong Seto; Wolfgang Wagermaier; Paul Zaslansky; Peter Boesecke; Peter Fratzl
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-09       Impact factor: 11.205

8.  Small-angle X-ray scattering from RNA, proteins, and protein complexes.

Authors:  Jan Lipfert; Sebastian Doniach
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

9.  Structural characterization of flexible proteins using small-angle X-ray scattering.

Authors:  Pau Bernadó; Efstratios Mylonas; Maxim V Petoukhov; Martin Blackledge; Dmitri I Svergun
Journal:  J Am Chem Soc       Date:  2007-04-06       Impact factor: 15.419

10.  Structural characterization of the active and inactive states of Src kinase in solution by small-angle X-ray scattering.

Authors:  Pau Bernadó; Yolanda Pérez; Dmitri I Svergun; Miquel Pons
Journal:  J Mol Biol       Date:  2007-11-28       Impact factor: 5.469

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  12 in total

1.  Macromolecular docking restrained by a small angle X-ray scattering profile.

Authors:  Dina Schneidman-Duhovny; Michal Hammel; Andrej Sali
Journal:  J Struct Biol       Date:  2010-10-12       Impact factor: 2.867

2.  An integrated high-throughput data acquisition system for biological solution X-ray scattering studies.

Authors:  Anne Martel; Ping Liu; Thomas M Weiss; Marc Niebuhr; Hiro Tsuruta
Journal:  J Synchrotron Radiat       Date:  2012-03-17       Impact factor: 2.616

3.  Accurate flexible fitting of high-resolution protein structures to small-angle x-ray scattering data using a coarse-grained model with implicit hydration shell.

Authors:  Wenjun Zheng; Mustafa Tekpinar
Journal:  Biophys J       Date:  2011-12-20       Impact factor: 4.033

Review 4.  X-ray scattering combined with coordinate-based analyses for applications in natural and artificial photosynthesis.

Authors:  David M Tiede; Kristy L Mardis; Xiaobing Zuo
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

Review 5.  Diffraction Techniques in Structural Biology.

Authors:  Martin Egli
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2016-06-01

6.  X-ray micro-diffraction studies on biological samples at the BioCAT Beamline 18-ID at the Advanced Photon Source.

Authors:  R A Barrea; O Antipova; D Gore; R Heurich; M Vukonich; N G Kujala; T C Irving; J P R O Orgel
Journal:  J Synchrotron Radiat       Date:  2014-08-08       Impact factor: 2.616

7.  RNA structure determination using SAXS data.

Authors:  Sichun Yang; Marc Parisien; François Major; Benoît Roux
Journal:  J Phys Chem B       Date:  2010-08-12       Impact factor: 2.991

8.  Diffraction techniques in structural biology.

Authors:  Martin Egli
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2010-06

Review 9.  Bridging the solution divide: comprehensive structural analyses of dynamic RNA, DNA, and protein assemblies by small-angle X-ray scattering.

Authors:  Robert P Rambo; John A Tainer
Journal:  Curr Opin Struct Biol       Date:  2010-01-22       Impact factor: 6.809

10.  Methods for SAXS-based structure determination of biomolecular complexes.

Authors:  Sichun Yang
Journal:  Adv Mater       Date:  2014-05-30       Impact factor: 30.849

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