Literature DB >> 22480731

The spliceosome: a flexible, reversible macromolecular machine.

Aaron A Hoskins1, Melissa J Moore.   

Abstract

With more than a hundred individual RNA and protein parts and a highly dynamic assembly and disassembly pathway, the spliceosome is arguably the most complicated macromolecular machine in the eukaryotic cell. This complexity has made kinetic and mechanistic analysis of splicing incredibly challenging. Yet, recent technological advances are now providing tools for understanding this process in much greater detail. Ranging from genome-wide analyses of splicing and creation of an orthogonal spliceosome in vivo, to purification of active spliceosomes and observation of single molecules in vitro, such new experimental approaches are yielding significant insight into the inner workings of this remarkable machine. These experiments are rewriting the textbooks, with a new picture emerging of a dynamic, malleable machine heavily influenced by the identity of its pre-mRNA substrate.
Copyright © 2012 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22480731      PMCID: PMC3508674          DOI: 10.1016/j.tibs.2012.02.009

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  71 in total

Review 1.  Pre-mRNA splicing: awash in a sea of proteins.

Authors:  Melissa S Jurica; Melissa J Moore
Journal:  Mol Cell       Date:  2003-07       Impact factor: 17.970

2.  Repositioning of the reaction intermediate within the catalytic center of the spliceosome.

Authors:  Maria M Konarska; Josep Vilardell; Charles C Query
Journal:  Mol Cell       Date:  2006-02-17       Impact factor: 17.970

3.  Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components.

Authors:  Zbigniew Warkocki; Peter Odenwälder; Jana Schmitzová; Florian Platzmann; Holger Stark; Henning Urlaub; Ralf Ficner; Patrizia Fabrizio; Reinhard Lührmann
Journal:  Nat Struct Mol Biol       Date:  2009-11-22       Impact factor: 15.369

4.  Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity.

Authors:  J J Hopfield
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

5.  Early commitment of yeast pre-mRNA to the spliceosome pathway.

Authors:  P Legrain; B Seraphin; M Rosbash
Journal:  Mol Cell Biol       Date:  1988-09       Impact factor: 4.272

Review 6.  Expansion of the eukaryotic proteome by alternative splicing.

Authors:  Timothy W Nilsen; Brenton R Graveley
Journal:  Nature       Date:  2010-01-28       Impact factor: 49.962

7.  The role of exon sequences in C complex spliceosome structure.

Authors:  Janine Ilagan; Patrick Yuh; Robert J Chalkley; A L Burlingame; Melissa S Jurica
Journal:  J Mol Biol       Date:  2009-09-15       Impact factor: 5.469

8.  RBM5/Luca-15/H37 regulates Fas alternative splice site pairing after exon definition.

Authors:  Sophie Bonnal; Concepción Martínez; Patrik Förch; Angela Bachi; Matthias Wilm; Juan Valcárcel
Journal:  Mol Cell       Date:  2008-10-10       Impact factor: 17.970

9.  Suppression of multiple substrate mutations by spliceosomal prp8 alleles suggests functional correlations with ribosomal ambiguity mutants.

Authors:  Charles C Query; Maria M Konarska
Journal:  Mol Cell       Date:  2004-05-07       Impact factor: 17.970

10.  Competition between the ATPase Prp5 and branch region-U2 snRNA pairing modulates the fidelity of spliceosome assembly.

Authors:  Yong-Zhen Xu; Charles C Query
Journal:  Mol Cell       Date:  2007-12-14       Impact factor: 17.970

View more
  102 in total

1.  Multiscale methods for computational RNA enzymology.

Authors:  Maria T Panteva; Thakshila Dissanayake; Haoyuan Chen; Brian K Radak; Erich R Kuechler; George M Giambaşu; Tai-Sung Lee; Darrin M York
Journal:  Methods Enzymol       Date:  2015-01-22       Impact factor: 1.600

2.  Graded requirement for the spliceosome in cell cycle progression.

Authors:  Zemfira Karamysheva; Laura A Díaz-Martínez; Ross Warrington; Hongtao Yu
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

3.  Mechanism of alternative splicing and its regulation.

Authors:  Yan Wang; Jing Liu; B O Huang; Yan-Mei Xu; Jing Li; Lin-Feng Huang; Jin Lin; Jing Zhang; Qing-Hua Min; Wei-Ming Yang; Xiao-Zhong Wang
Journal:  Biomed Rep       Date:  2014-12-17

4.  An Allosteric Network for Spliceosome Activation Revealed by High-Throughput Suppressor Analysis in Saccharomyces cerevisiae.

Authors:  David A Brow
Journal:  Genetics       Date:  2019-03-21       Impact factor: 4.562

Review 5.  Understanding the mechanistic basis of non-coding RNA through molecular dynamics simulations.

Authors:  Giulia Palermo; Lorenzo Casalino; Alessandra Magistrato; J Andrew McCammon
Journal:  J Struct Biol       Date:  2019-03-15       Impact factor: 2.867

6.  All-atom simulations disentangle the functional dynamics underlying gene maturation in the intron lariat spliceosome.

Authors:  Lorenzo Casalino; Giulia Palermo; Angelo Spinello; Ursula Rothlisberger; Alessandra Magistrato
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-11       Impact factor: 11.205

7.  Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon.

Authors:  Kranthi K Mandadi; Karen-Beth G Scholthof
Journal:  Plant Cell       Date:  2015-01-29       Impact factor: 11.277

Review 8.  RNA helicases in splicing.

Authors:  Olivier Cordin; Jean D Beggs
Journal:  RNA Biol       Date:  2012-12-10       Impact factor: 4.652

9.  Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis.

Authors:  Eugene J Gardner; Zehra F Nizami; C Conover Talbot; Joseph G Gall
Journal:  Genes Dev       Date:  2012-11-15       Impact factor: 11.361

Review 10.  Dynamic integration of splicing within gene regulatory pathways.

Authors:  Ulrich Braunschweig; Serge Gueroussov; Alex M Plocik; Brenton R Graveley; Benjamin J Blencowe
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.