Literature DB >> 19935684

Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components.

Zbigniew Warkocki1, Peter Odenwälder, Jana Schmitzová, Florian Platzmann, Holger Stark, Henning Urlaub, Ralf Ficner, Patrizia Fabrizio, Reinhard Lührmann.   

Abstract

The spliceosome is a ribonucleoprotein machine that removes introns from pre-mRNA in a two-step reaction. To investigate the catalytic steps of splicing, we established an in vitro splicing complementation system. Spliceosomes stalled before step 1 of this process were purified to near-homogeneity from a temperature-sensitive mutant of the RNA helicase Prp2, compositionally defined, and shown to catalyze efficient step 1 when supplemented with recombinant Prp2, Spp2 and Cwc25, thereby demonstrating that Cwc25 has a previously unknown role in promoting step 1. Step 2 catalysis additionally required Prp16, Slu7, Prp18 and Prp22. Our data further suggest that Prp2 facilitates catalytic activation by remodeling the spliceosome, including destabilizing the SF3a and SF3b proteins, likely exposing the branch site before step 1. Remodeling by Prp2 was confirmed by negative stain EM and image processing. This system allows future mechanistic analyses of spliceosome activation and catalysis.

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Year:  2009        PMID: 19935684     DOI: 10.1038/nsmb.1729

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  41 in total

1.  Preferred amino acids and thermostability.

Authors:  Sávio T Farias; Maria Christina M Bonato
Journal:  Genet Mol Res       Date:  2003-12-30

2.  Thermo-search: lifestyle and thermostability analysis.

Authors:  Savio T Farias; Marx G van der Linden; Thais G Rêgo; Demétrius A M Araújo; Maria Christina M Bonato
Journal:  In Silico Biol       Date:  2004

3.  The Orbitrap: a new mass spectrometer.

Authors:  Qizhi Hu; Robert J Noll; Hongyan Li; Alexander Makarov; Mark Hardman; R Graham Cooks
Journal:  J Mass Spectrom       Date:  2005-04       Impact factor: 1.982

4.  Both catalytic steps of nuclear pre-mRNA splicing are reversible.

Authors:  Chi-Kang Tseng; Soo-Chen Cheng
Journal:  Science       Date:  2008-06-27       Impact factor: 47.728

5.  A potential role for U2AF-SAP 155 interactions in recruiting U2 snRNP to the branch site.

Authors:  O Gozani; J Potashkin; R Reed
Journal:  Mol Cell Biol       Date:  1998-08       Impact factor: 4.272

6.  Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.

Authors:  Melanie D Ohi; Andrew J Link; Liping Ren; Jennifer L Jennings; W Hayes McDonald; Kathleen L Gould
Journal:  Mol Cell Biol       Date:  2002-04       Impact factor: 4.272

7.  PRP18, a protein required for the second reaction in pre-mRNA splicing.

Authors:  U Vijayraghavan; J Abelson
Journal:  Mol Cell Biol       Date:  1990-01       Impact factor: 4.272

8.  Evidence that U2/U6 helix I promotes both catalytic steps of pre-mRNA splicing and rearranges in between these steps.

Authors:  Melissa A Mefford; Jonathan P Staley
Journal:  RNA       Date:  2009-05-20       Impact factor: 4.942

Review 9.  The spliceosome: the most complex macromolecular machine in the cell?

Authors:  Timothy W Nilsen
Journal:  Bioessays       Date:  2003-12       Impact factor: 4.345

10.  How Slu7 and Prp18 cooperate in the second step of yeast pre-mRNA splicing.

Authors:  Shelly-Ann James; William Turner; Beate Schwer
Journal:  RNA       Date:  2002-08       Impact factor: 4.942

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  99 in total

1.  Prp2-mediated protein rearrangements at the catalytic core of the spliceosome as revealed by dcFCCS.

Authors:  Thomas Ohrt; Mira Prior; Julia Dannenberg; Peter Odenwälder; Olexandr Dybkov; Nicolas Rasche; Jana Schmitzová; Ingo Gregor; Patrizia Fabrizio; Jörg Enderlein; Reinhard Lührmann
Journal:  RNA       Date:  2012-04-25       Impact factor: 4.942

2.  Crystal structure of Cwc2 reveals a novel architecture of a multipartite RNA-binding protein.

Authors:  Jana Schmitzová; Nicolas Rasche; Olexander Dybkov; Katharina Kramer; Patrizia Fabrizio; Henning Urlaub; Reinhard Lührmann; Vladimir Pena
Journal:  EMBO J       Date:  2012-03-09       Impact factor: 11.598

3.  DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps.

Authors:  Chi-Kang Tseng; Hsueh-Lien Liu; Soo-Chen Cheng
Journal:  RNA       Date:  2010-11-22       Impact factor: 4.942

4.  Functional organization of the Sm core in the crystal structure of human U1 snRNP.

Authors:  Gert Weber; Simon Trowitzsch; Berthold Kastner; Reinhard Lührmann; Markus C Wahl
Journal:  EMBO J       Date:  2010-11-26       Impact factor: 11.598

5.  A U1-U2 snRNP interaction network during intron definition.

Authors:  Wei Shao; Hyun-Soo Kim; Yang Cao; Yong-Zhen Xu; Charles C Query
Journal:  Mol Cell Biol       Date:  2011-11-07       Impact factor: 4.272

Review 6.  Splicing fidelity: DEAD/H-box ATPases as molecular clocks.

Authors:  Prakash Koodathingal; Jonathan P Staley
Journal:  RNA Biol       Date:  2013-06-03       Impact factor: 4.652

7.  RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core.

Authors:  Maria Anokhina; Sergey Bessonov; Zhichao Miao; Eric Westhof; Klaus Hartmuth; Reinhard Lührmann
Journal:  EMBO J       Date:  2013-09-03       Impact factor: 11.598

8.  The splice is right: guarantors of fidelity in pre-mRNA splicing.

Authors:  David S Horowitz
Journal:  RNA       Date:  2011-02-28       Impact factor: 4.942

9.  The Evolutionarily-conserved Polyadenosine RNA Binding Protein, Nab2, Cooperates with Splicing Machinery to Regulate the Fate of pre-mRNA.

Authors:  Sharon Soucek; Yi Zeng; Deepti L Bellur; Megan Bergkessel; Kevin J Morris; Qiudong Deng; Duc Duong; Nicholas T Seyfried; Christine Guthrie; Jonathan P Staley; Milo B Fasken; Anita H Corbett
Journal:  Mol Cell Biol       Date:  2016-08-15       Impact factor: 4.272

Review 10.  Lights, camera, action! Capturing the spliceosome and pre-mRNA splicing with single-molecule fluorescence microscopy.

Authors:  Alexander C DeHaven; Ian S Norden; Aaron A Hoskins
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-05-20       Impact factor: 9.957

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