Literature DB >> 23498935

Dynamic integration of splicing within gene regulatory pathways.

Ulrich Braunschweig1, Serge Gueroussov, Alex M Plocik, Brenton R Graveley, Benjamin J Blencowe.   

Abstract

Precursor mRNA splicing is one of the most highly regulated processes in metazoan species. In addition to generating vast repertoires of RNAs and proteins, splicing has a profound impact on other gene regulatory layers, including mRNA transcription, turnover, transport, and translation. Conversely, factors regulating chromatin and transcription complexes impact the splicing process. This extensive crosstalk between gene regulatory layers takes advantage of dynamic spatial, physical, and temporal organizational properties of the cell nucleus, and further emphasizes the importance of developing a multidimensional understanding of splicing control.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23498935      PMCID: PMC3642998          DOI: 10.1016/j.cell.2013.02.034

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  180 in total

1.  Malat1 is not an essential component of nuclear speckles in mice.

Authors:  Shinichi Nakagawa; Joanna Y Ip; Go Shioi; Vidisha Tripathi; Xinying Zong; Tetsuro Hirose; Kannanganattu V Prasanth
Journal:  RNA       Date:  2012-06-20       Impact factor: 4.942

2.  Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.

Authors:  Qun Pan; Ofer Shai; Leo J Lee; Brendan J Frey; Benjamin J Blencowe
Journal:  Nat Genet       Date:  2008-11-02       Impact factor: 38.330

3.  Differential GC content between exons and introns establishes distinct strategies of splice-site recognition.

Authors:  Maayan Amit; Maya Donyo; Dror Hollander; Amir Goren; Eddo Kim; Sahar Gelfman; Galit Lev-Maor; David Burstein; Schraga Schwartz; Benny Postolsky; Tal Pupko; Gil Ast
Journal:  Cell Rep       Date:  2012-05-03       Impact factor: 9.423

4.  First exon length controls active chromatin signatures and transcription.

Authors:  Nicole I Bieberstein; Fernando Carrillo Oesterreich; Korinna Straube; Karla M Neugebauer
Journal:  Cell Rep       Date:  2012-07-20       Impact factor: 9.423

5.  Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions.

Authors:  Dev M Bhatt; Amy Pandya-Jones; Ann-Jay Tong; Iros Barozzi; Michelle M Lissner; Gioacchino Natoli; Douglas L Black; Stephen T Smale
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

6.  The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult.

Authors:  Bin Zhang; Gayatri Arun; Yuntao S Mao; Zsolt Lazar; Gene Hung; Gourab Bhattacharjee; Xiaokun Xiao; Carmen J Booth; Jie Wu; Chaolin Zhang; David L Spector
Journal:  Cell Rep       Date:  2012-06-28       Impact factor: 9.423

7.  Tissue-specific alternative splicing remodels protein-protein interaction networks.

Authors:  Jonathan D Ellis; Miriam Barrios-Rodiles; Recep Colak; Manuel Irimia; Taehyung Kim; John A Calarco; Xinchen Wang; Qun Pan; Dave O'Hanlon; Philip M Kim; Jeffrey L Wrana; Benjamin J Blencowe
Journal:  Mol Cell       Date:  2012-06-29       Impact factor: 17.970

8.  U1 snRNP determines mRNA length and regulates isoform expression.

Authors:  Michael G Berg; Larry N Singh; Ihab Younis; Qiang Liu; Anna Maria Pinto; Daisuke Kaida; Zhenxi Zhang; Sungchan Cho; Scott Sherrill-Mix; Lili Wan; Gideon Dreyfuss
Journal:  Cell       Date:  2012-07-06       Impact factor: 41.582

9.  The chromatin remodeling and mRNA splicing functions of the Brahma (SWI/SNF) complex are mediated by the SNR1/SNF5 regulatory subunit.

Authors:  Claudia B Zraly; Andrew K Dingwall
Journal:  Nucleic Acids Res       Date:  2012-03-29       Impact factor: 16.971

10.  Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks.

Authors:  Marija Buljan; Guilhem Chalancon; Sebastian Eustermann; Gunter P Wagner; Monika Fuxreiter; Alex Bateman; M Madan Babu
Journal:  Mol Cell       Date:  2012-06-29       Impact factor: 17.970

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  197 in total

Review 1.  The pathogenicity of splicing defects: mechanistic insights into pre-mRNA processing inform novel therapeutic approaches.

Authors:  Elisabeth Daguenet; Gwendal Dujardin; Juan Valcárcel
Journal:  EMBO Rep       Date:  2015-11-13       Impact factor: 8.807

Review 2.  Understanding Human Autoimmunity and Autoinflammation Through Transcriptomics.

Authors:  Romain Banchereau; Alma-Martina Cepika; Jacques Banchereau; Virginia Pascual
Journal:  Annu Rev Immunol       Date:  2017-01-30       Impact factor: 28.527

Review 3.  The alternative heart: impact of alternative splicing in heart disease.

Authors:  Enrique Lara-Pezzi; Jesús Gómez-Salinero; Alberto Gatto; Pablo García-Pavía
Journal:  J Cardiovasc Transl Res       Date:  2013-06-18       Impact factor: 4.132

Review 4.  Chromatin's thread to alternative splicing regulation.

Authors:  Camilla Iannone; Juan Valcárcel
Journal:  Chromosoma       Date:  2013-08-03       Impact factor: 4.316

5.  RNAtomy of the Spliceosome's heart.

Authors:  Sophie Bonnal; Juan Valcárcel
Journal:  EMBO J       Date:  2013-09-24       Impact factor: 11.598

6.  HIFs enhance the transcriptional activation and splicing of adrenomedullin.

Authors:  Johnny A Sena; Liyi Wang; Matthew R Pawlus; Cheng-Jun Hu
Journal:  Mol Cancer Res       Date:  2014-02-12       Impact factor: 5.852

7.  Alternative splicing of MBD2 supports self-renewal in human pluripotent stem cells.

Authors:  Yu Lu; Yuin-Han Loh; Hu Li; Marcella Cesana; Scott B Ficarro; Jignesh R Parikh; Nathan Salomonis; Cheng-Xu Delon Toh; Stelios T Andreadis; C John Luckey; James J Collins; George Q Daley; Jarrod A Marto
Journal:  Cell Stem Cell       Date:  2014-05-08       Impact factor: 24.633

8.  Multiple structurally distinct ERα mRNA variants in zebrafish are differentially expressed by tissue type, stage of development and estrogen exposure.

Authors:  Kellie A Cotter; Anya Yershov; Apolonia Novillo; Gloria V Callard
Journal:  Gen Comp Endocrinol       Date:  2013-10-01       Impact factor: 2.822

Review 9.  Transcript maturation in apicomplexan parasites.

Authors:  Elena S Suvorova; Michael W White
Journal:  Curr Opin Microbiol       Date:  2014-06-14       Impact factor: 7.934

10.  Repression of Pumilio Protein Expression by Rbfox1 Promotes Germ Cell Differentiation.

Authors:  Arnaldo Carreira-Rosario; Varsha Bhargava; Jens Hillebrand; Rahul K Kollipara; Mani Ramaswami; Michael Buszczak
Journal:  Dev Cell       Date:  2016-03-07       Impact factor: 12.270

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