Literature DB >> 4530290

Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity.

J J Hopfield.   

Abstract

The specificity with which the genetic code is read in protein synthesis, and with which other highly specific biosynthetic reactions take place, can be increased above the level available from free energy differences in intermediates or kinetic barriers by a process defined here as kinetic proofreading. A simple kinetic pathway is described which results in this proofreading when the reaction is strongly but nonspecifically driven, e.g., by phosphate hydrolysis. Protein synthesis, amino acid recognition, and DNA replication, all exhibit the features of this model. In each case, known reactions which otherwise appear to be useless or deleterious complications are seen to be essential to the proofreading function.

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Year:  1974        PMID: 4530290      PMCID: PMC434344          DOI: 10.1073/pnas.71.10.4135

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

1.  Studies on the biochemical basis of spontaneous mutation. I. A comparison of the deoxyribonucleic acid polymerases of mutator, antimutator, and wild type strains of bacteriophage T4.

Authors:  N Muzyczka; R L Poland; M J Bessman
Journal:  J Biol Chem       Date:  1972-11-25       Impact factor: 5.157

2.  Enzymatic synthesis of deoxyribonucleic acid. 36. A proofreading function for the 3' leads to 5' exonuclease activity in deoxyribonucleic acid polymerases.

Authors:  D Brutlag; A Kornberg
Journal:  J Biol Chem       Date:  1972-01-10       Impact factor: 5.157

Review 3.  The mechanism of aminoacylation of transfer RNA.

Authors:  R B Loftfield
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1972

4.  The specificity of enzymic reactions. Aminoacyl-soluble RNA ligases.

Authors:  R B Loftfield; E A Eigner
Journal:  Biochim Biophys Acta       Date:  1966-12-28

5.  Mutation and evolution at the molecular level.

Authors:  M Kimura; T Ohta
Journal:  Genetics       Date:  1973-04       Impact factor: 4.562

6.  Enzymatic synthesis of deoxyribonucleic acid. XXV. Purification and properties of deoxyribonucleic acid polymerase induced by infection with phage T4.

Authors:  M Goulian; Z J Lucas; A Kornberg
Journal:  J Biol Chem       Date:  1968-02-10       Impact factor: 5.157

7.  Relaxation kinetics of dimer formation by self complementary oligonucleotides.

Authors:  M E Craig; D M Crothers; P Doty
Journal:  J Mol Biol       Date:  1971-12-14       Impact factor: 5.469

8.  Transfer ribonucleic acid-induced hydrolysis of valyladenylate bound to isoleucyl ribonucleic acid synthetase.

Authors:  A N Baldwin; P Berg
Journal:  J Biol Chem       Date:  1966-02-25       Impact factor: 5.157

9.  The mechanism of reaction of methionyl-tRNA synthetase from Escherichia coli. Interaction of the enzyme with ligands of the amino-acid-activation reaction.

Authors:  S Blanquet; G Fayat; J P Waller; M Iwatsubo
Journal:  Eur J Biochem       Date:  1972-01-21

Review 10.  Protein biosynthesis.

Authors:  J Lucas-Lenard
Journal:  Annu Rev Biochem       Date:  1971       Impact factor: 23.643

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  417 in total

1.  The accuracy of codon recognition by polypeptide release factors.

Authors:  D V Freistroffer; M Kwiatkowski; R H Buckingham; M Ehrenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

2.  Fluctuations in repressor control: thermodynamic constraints on stochastic focusing.

Authors:  O G Berg; J Paulsson; M Ehrenberg
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

3.  Analysis of codon:anticodon interactions within the ribosome provides new insights into codon reading and the genetic code structure.

Authors:  V I Lim; J F Curran
Journal:  RNA       Date:  2001-07       Impact factor: 4.942

Review 4.  Signaling cascades: escape from kinetic proofreading.

Authors:  D MacGlashan
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-19       Impact factor: 11.205

5.  Preferential binding of ATR protein to UV-damaged DNA.

Authors:  Keziban Unsal-Kaçmaz; Alexander M Makhov; Jack D Griffith; Aziz Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-14       Impact factor: 11.205

6.  The role of proofreading in signal transduction specificity.

Authors:  Peter S Swain; Eric D Siggia
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

7.  Breaking the affinity ceiling for antibodies and T cell receptors.

Authors:  J Foote; H N Eisen
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-26       Impact factor: 11.205

8.  Incoming nucleotide binds to Klenow ternary complex leading to stable physical sequestration of preceding dNTP on DNA.

Authors:  S Ramanathan; K V Chary; B J Rao
Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

Review 9.  Responding to chemical gradients: bacterial chemotaxis.

Authors:  Victor Sourjik; Ned S Wingreen
Journal:  Curr Opin Cell Biol       Date:  2011-12-09       Impact factor: 8.382

Review 10.  Fidelity at the molecular level: lessons from protein synthesis.

Authors:  Hani S Zaher; Rachel Green
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

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