Literature DB >> 23229095

RNA helicases in splicing.

Olivier Cordin1, Jean D Beggs.   

Abstract

In eukaryotic cells, introns are spliced from pre-mRNAs by the spliceosome. Both the composition and the structure of the spliceosome are highly dynamic, and eight DExD/H RNA helicases play essential roles in controlling conformational rearrangements. There is evidence that the various helicases are functionally and physically connected with each other and with many other factors in the spliceosome. Understanding the dynamics of those interactions is essential to comprehend the mechanism and regulation of normal as well as of pathological splicing. This review focuses on recent advances in the characterization of the splicing helicases and their interactions, and highlights the deep integration of splicing helicases in global mRNP biogenesis pathways.

Keywords:  ATPase; DEAD-box; DEAH-box; DExD/H helicase; protein partners

Mesh:

Substances:

Year:  2012        PMID: 23229095      PMCID: PMC3590240          DOI: 10.4161/rna.22547

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  181 in total

1.  Use of minigene systems to dissect alternative splicing elements.

Authors:  Thomas A Cooper
Journal:  Methods       Date:  2005-12       Impact factor: 3.608

2.  The ATPase and helicase activities of Prp43p are stimulated by the G-patch protein Pfa1p during yeast ribosome biogenesis.

Authors:  Simon Lebaron; Christophe Papin; Régine Capeyrou; Yan-Ling Chen; Carine Froment; Bernard Monsarrat; Michèle Caizergues-Ferrer; Mikhail Grigoriev; Yves Henry
Journal:  EMBO J       Date:  2009-12-16       Impact factor: 11.598

3.  Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes.

Authors:  M Company; J Arenas; J Abelson
Journal:  Nature       Date:  1991-02-07       Impact factor: 49.962

4.  Prp43 is an essential RNA-dependent ATPase required for release of lariat-intron from the spliceosome.

Authors:  Arnold Martin; Susanne Schneider; Beate Schwer
Journal:  J Biol Chem       Date:  2002-03-08       Impact factor: 5.157

Review 5.  RNA helicases at work: binding and rearranging.

Authors:  Eckhard Jankowsky
Journal:  Trends Biochem Sci       Date:  2011-01       Impact factor: 13.807

6.  Definition of a spliceosome interaction domain in yeast Prp2 ATPase.

Authors:  Gretchen Edwalds-Gilbert; Dong-Ho Kim; Edward Silverman; Ren-Jang Lin
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

7.  Rapid, transcript-specific changes in splicing in response to environmental stress.

Authors:  Jeffrey A Pleiss; Gregg B Whitworth; Megan Bergkessel; Christine Guthrie
Journal:  Mol Cell       Date:  2007-09-21       Impact factor: 17.970

8.  A trans-acting suppressor restores splicing of a yeast intron with a branch point mutation.

Authors:  J R Couto; J Tamm; R Parker; C Guthrie
Journal:  Genes Dev       Date:  1987-07       Impact factor: 11.361

9.  Structure of the DNA repair helicase hel308 reveals DNA binding and autoinhibitory domains.

Authors:  Jodi D Richards; Kenneth A Johnson; Huanting Liu; Anne-Marie McRobbie; Stephen McMahon; Muse Oke; Lester Carter; James H Naismith; Malcolm F White
Journal:  J Biol Chem       Date:  2007-12-04       Impact factor: 5.157

Review 10.  Structure and function of SWI/SNF chromatin remodeling complexes and mechanistic implications for transcription.

Authors:  Liling Tang; Eva Nogales; Claudio Ciferri
Journal:  Prog Biophys Mol Biol       Date:  2010-05-20       Impact factor: 3.667

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  59 in total

Review 1.  The DDX5/Dbp2 subfamily of DEAD-box RNA helicases.

Authors:  Zheng Xing; Wai Kit Ma; Elizabeth J Tran
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-12-02       Impact factor: 9.957

Review 2.  Functions and regulation of the Brr2 RNA helicase during splicing.

Authors:  Eva Absmeier; Karine F Santos; Markus C Wahl
Journal:  Cell Cycle       Date:  2016-10-28       Impact factor: 4.534

3.  Protein segregase meddles in remodeling of mRNA-protein complexes.

Authors:  Chyi-Ying A Chen; Ann-Bin Shyu
Journal:  Genes Dev       Date:  2013-05-01       Impact factor: 11.361

Review 4.  RNA helicase proteins as chaperones and remodelers.

Authors:  Inga Jarmoskaite; Rick Russell
Journal:  Annu Rev Biochem       Date:  2014-03-12       Impact factor: 23.643

5.  Structural analysis of the spliceosomal RNA helicase Prp28 from the thermophilic eukaryote Chaetomium thermophilum.

Authors:  Marcel J Tauchert; Ralf Ficner
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-04-22       Impact factor: 1.056

Review 6.  The multiple functions of RNA helicases as drivers and regulators of gene expression.

Authors:  Cyril F Bourgeois; Franck Mortreux; Didier Auboeuf
Journal:  Nat Rev Mol Cell Biol       Date:  2016-06-02       Impact factor: 94.444

7.  The RNA helicase DDX46 inhibits innate immunity by entrapping m6A-demethylated antiviral transcripts in the nucleus.

Authors:  Qingliang Zheng; Jin Hou; Ye Zhou; Zhenyang Li; Xuetao Cao
Journal:  Nat Immunol       Date:  2017-08-28       Impact factor: 25.606

Review 8.  Splicing and transcription touch base: co-transcriptional spliceosome assembly and function.

Authors:  Lydia Herzel; Diana S M Ottoz; Tara Alpert; Karla M Neugebauer
Journal:  Nat Rev Mol Cell Biol       Date:  2017-08-09       Impact factor: 94.444

Review 9.  DEAH-Box RNA Helicases in Pre-mRNA Splicing.

Authors:  Francesca De Bortoli; Sara Espinosa; Rui Zhao
Journal:  Trends Biochem Sci       Date:  2020-11-30       Impact factor: 13.807

10.  A temperature-sensitive allele of a putative mRNA splicing helicase down-regulates many cell wall genes and causes radial swelling in Arabidopsis thaliana.

Authors:  Paul A Howles; Leigh K Gebbie; David A Collings; Arvind Varsani; Ronan C Broad; Stephen Ohms; Rosemary J Birch; Ann H Cork; Tony Arioli; Richard E Williamson
Journal:  Plant Mol Biol       Date:  2016-03-23       Impact factor: 4.076

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