Literature DB >> 20110989

Expansion of the eukaryotic proteome by alternative splicing.

Timothy W Nilsen1, Brenton R Graveley.   

Abstract

The collection of components required to carry out the intricate processes involved in generating and maintaining a living, breathing and, sometimes, thinking organism is staggeringly complex. Where do all of the parts come from? Early estimates stated that about 100,000 genes would be required to make up a mammal; however, the actual number is less than one-quarter of that, barely four times the number of genes in budding yeast. It is now clear that the 'missing' information is in large part provided by alternative splicing, the process by which multiple different functional messenger RNAs, and therefore proteins, can be synthesized from a single gene.

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Year:  2010        PMID: 20110989      PMCID: PMC3443858          DOI: 10.1038/nature08909

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  84 in total

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Authors:  Chanseok Shin; James L Manley
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2.  A regulator of Dscam mutually exclusive splicing fidelity.

Authors:  Sara Olson; Marco Blanchette; Jung Park; Yiannis Savva; Gene W Yeo; Joanne M Yeakley; Donald C Rio; Brenton R Graveley
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3.  The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing.

Authors:  Eugene V Makeyev; Jiangwen Zhang; Monica A Carrasco; Tom Maniatis
Journal:  Mol Cell       Date:  2007-08-03       Impact factor: 17.970

4.  The haplo-spliceo-transcriptome: common variations in alternative splicing in the human population.

Authors:  Brenton R Graveley
Journal:  Trends Genet       Date:  2007-12-03       Impact factor: 11.639

5.  SnapShot: The splicing regulatory machinery.

Authors:  Mathieu Gabut; Sidharth Chaudhry; Benjamin J Blencowe
Journal:  Cell       Date:  2008-04-04       Impact factor: 41.582

Review 6.  Coupling transcription and alternative splicing.

Authors:  Alberto R Kornblihtt
Journal:  Adv Exp Med Biol       Date:  2007       Impact factor: 2.622

7.  The protein Sex-lethal antagonizes the splicing factor U2AF to regulate alternative splicing of transformer pre-mRNA.

Authors:  J Valcárcel; R Singh; P D Zamore; M R Green
Journal:  Nature       Date:  1993-03-11       Impact factor: 49.962

8.  Evidence for the evolutionary nascence of a novel sex determination pathway in honeybees.

Authors:  Martin Hasselmann; Tanja Gempe; Morten Schiøtt; Carlos Gustavo Nunes-Silva; Marianne Otte; Martin Beye
Journal:  Nature       Date:  2008-06-25       Impact factor: 49.962

9.  Exon tethering in transcription by RNA polymerase II.

Authors:  Michael J Dye; Natalia Gromak; Nick J Proudfoot
Journal:  Mol Cell       Date:  2006-03-17       Impact factor: 17.970

10.  Recognition of unknown conserved alternatively spliced exons.

Authors:  Uwe Ohler; Noam Shomron; Christopher B Burge
Journal:  PLoS Comput Biol       Date:  2005-07-08       Impact factor: 4.475

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  875 in total

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Authors:  Angela N Brooks; Li Yang; Michael O Duff; Kasper D Hansen; Jung W Park; Sandrine Dudoit; Steven E Brenner; Brenton R Graveley
Journal:  Genome Res       Date:  2010-10-04       Impact factor: 9.043

2.  Species-specific exon loss in human transcriptomes.

Authors:  Jinkai Wang; Zhi-xiang Lu; Collin J Tokheim; Sara E Miller; Yi Xing
Journal:  Mol Biol Evol       Date:  2014-11-14       Impact factor: 16.240

3.  In vivo effects on intron retention and exon skipping by the U2AF large subunit and SF1/BBP in the nematode Caenorhabditis elegans.

Authors:  Long Ma; Zhiping Tan; Yanling Teng; Sebastian Hoersch; H Robert Horvitz
Journal:  RNA       Date:  2011-10-27       Impact factor: 4.942

Review 4.  Biomedical impact of splicing mutations revealed through exome sequencing.

Authors:  Bahar Taneri; Esra Asilmaz; Terry Gaasterland
Journal:  Mol Med       Date:  2012-03-30       Impact factor: 6.354

Review 5.  Targeting DNA polymerase ß for therapeutic intervention.

Authors:  Eva M Goellner; David Svilar; Karen H Almeida; Robert W Sobol
Journal:  Curr Mol Pharmacol       Date:  2012-01       Impact factor: 3.339

6.  Quantitative proteomics reveals new insights into erythrocyte invasion by Plasmodium falciparum.

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Journal:  Mol Cell Proteomics       Date:  2011-10-24       Impact factor: 5.911

7.  "Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity.

Authors:  Irma Lozada-Chávez; Peter F Stadler; Sonja J Prohaska
Journal:  Orig Life Evol Biosph       Date:  2012-02-10       Impact factor: 1.950

8.  Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing.

Authors:  Kimberly A Dittmar; Peng Jiang; Juw Won Park; Karine Amirikian; Ji Wan; Shihao Shen; Yi Xing; Russell P Carstens
Journal:  Mol Cell Biol       Date:  2012-02-21       Impact factor: 4.272

9.  Transcriptome-wide stability analysis uncovers LARP4-mediated NFκB1 mRNA stabilization during T cell activation.

Authors:  Yi Tian; Zhouhao Zeng; Xiang Li; Yiyin Wang; Runsen Chen; Sandy Mattijssen; Sergei Gaidamakov; Yuzhang Wu; Richard J Maraia; Weiqun Peng; Jun Zhu
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

10.  Fine-tuning and autoregulation of the intestinal determinant and tumor suppressor homeobox gene CDX2 by alternative splicing.

Authors:  Camille Balbinot; Marie Vanier; Olivier Armant; Asmaa Nair; Julien Penichon; Christine Soret; Elisabeth Martin; Thoueiba Saandi; Jean-Marie Reimund; Jacqueline Deschamps; Felix Beck; Claire Domon-Dell; Isabelle Gross; Isabelle Duluc; Jean-Noël Freund
Journal:  Cell Death Differ       Date:  2017-09-01       Impact factor: 15.828

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