Literature DB >> 22445175

Bacterial diterpene synthases: new opportunities for mechanistic enzymology and engineered biosynthesis.

Michael J Smanski1, Ryan M Peterson, Sheng-Xiong Huang, Ben Shen.   

Abstract

Diterpenoid biosynthesis has been extensively studied in plants and fungi, yet cloning and engineering diterpenoid pathways in these organisms remain challenging. Bacteria are emerging as prolific producers of diterpenoid natural products, and bacterial diterpene synthases are poised to make significant contributions to our understanding of terpenoid biosynthesis. Here we will first survey diterpenoid natural products of bacterial origin and briefly review their biosynthesis with emphasis on diterpene synthases (DTSs) that channel geranylgeranyl diphosphate to various diterpenoid scaffolds. We will then highlight differences of DTSs of bacterial and higher organism origins and discuss the challenges in discovering novel bacterial DTSs. We will conclude by discussing new opportunities for DTS mechanistic enzymology and applications of bacterial DTS in biocatalysis and metabolic pathway engineering.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22445175      PMCID: PMC3328645          DOI: 10.1016/j.cbpa.2012.03.002

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  63 in total

1.  Bifunctional abietadiene synthase: mutual structural dependence of the active sites for protonation-initiated and ionization-initiated cyclizations.

Authors:  Reuben J Peters; Ora A Carter; Yan Zhang; Brian W Matthews; Rodney B Croteau
Journal:  Biochemistry       Date:  2003-03-11       Impact factor: 3.162

2.  Pentalenene synthase. Analysis of active site residues by site-directed mutagenesis.

Authors:  Myriam Seemann; Guangzhi Zhai; Jan-Willem de Kraker; Chiana M Paschall; David W Christianson; David E Cane
Journal:  J Am Chem Soc       Date:  2002-07-03       Impact factor: 15.419

3.  Biosynthetic studies of platensimycin.

Authors:  Kithsiri B Herath; Athula B Attygalle; Sheo B Singh
Journal:  J Am Chem Soc       Date:  2007-11-23       Impact factor: 15.419

4.  Mycobacterium tuberculosis H37Rv3377c encodes the diterpene cyclase for producing the halimane skeleton.

Authors:  Chiaki Nakano; Tomoo Okamura; Tsutomu Sato; Tohru Dairi; Tsutomu Hoshino
Journal:  Chem Commun (Camb)       Date:  2005-01-04       Impact factor: 6.222

5.  Molecular cloning and characterization of a cDNA encoding the gibberellin biosynthetic enzyme ent-kaurene synthase B from pumpkin (Cucurbita maxima L.).

Authors:  S Yamaguchi; T Saito; H Abe; H Yamane; N Murofushi; Y Kamiya
Journal:  Plant J       Date:  1996-08       Impact factor: 6.417

6.  Characterization of the Rv3378c gene product, a new diterpene synthase for producing tuberculosinol and (13R, S)-isotuberculosinol (nosyberkol), from the Mycobacterium tuberculosis H37Rv genome.

Authors:  Chiaki Nakano; Takahiro Ootsuka; Kazutoshi Takayama; Toshiaki Mitsui; Tsutomu Sato; Tsutomu Hoshino
Journal:  Biosci Biotechnol Biochem       Date:  2011-01-07       Impact factor: 2.043

7.  Platensimycin is a selective FabF inhibitor with potent antibiotic properties.

Authors:  Jun Wang; Stephen M Soisson; Katherine Young; Wesley Shoop; Srinivas Kodali; Andrew Galgoci; Ronald Painter; Gopalakrishnan Parthasarathy; Yui S Tang; Richard Cummings; Sookhee Ha; Karen Dorso; Mary Motyl; Hiranthi Jayasuriya; John Ondeyka; Kithsiri Herath; Chaowei Zhang; Lorraine Hernandez; John Allocco; Angela Basilio; José R Tormo; Olga Genilloud; Francisca Vicente; Fernando Pelaez; Lawrence Colwell; Sang Ho Lee; Bruce Michael; Thomas Felcetto; Charles Gill; Lynn L Silver; Jeffery D Hermes; Ken Bartizal; John Barrett; Dennis Schmatz; Joseph W Becker; Doris Cully; Sheo B Singh
Journal:  Nature       Date:  2006-05-18       Impact factor: 49.962

8.  Discovery of platencin, a dual FabF and FabH inhibitor with in vivo antibiotic properties.

Authors:  Jun Wang; Srinivas Kodali; Sang Ho Lee; Andrew Galgoci; Ronald Painter; Karen Dorso; Fred Racine; Mary Motyl; Lorraine Hernandez; Elizabeth Tinney; Steven L Colletti; Kithsiri Herath; Richard Cummings; Oscar Salazar; Ignacio González; Angela Basilio; Francisca Vicente; Olga Genilloud; Fernando Pelaez; Hiranthi Jayasuriya; Katherine Young; Doris F Cully; Sheo B Singh
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-24       Impact factor: 11.205

9.  Characterization of the Rv3377c gene product, a type-B diterpene cyclase, from the Mycobacterium tuberculosis H37 genome.

Authors:  Chiaki Nakano; Tsutomu Hoshino
Journal:  Chembiochem       Date:  2009-08-17       Impact factor: 3.164

10.  Identification of diterpene biosynthetic gene clusters and functional analysis of labdane-related diterpene cyclases in Phomopsis amygdali.

Authors:  Tomonobu Toyomasu; Rie Niida; Hiromichi Kenmoku; Yuri Kanno; Shigeyoshi Miura; Chiaki Nakano; Yoshihito Shiono; Wataru Mitsuhashi; Hiroaki Toshima; Hideaki Oikawa; Tsutomu Hoshino; Tohru Dairi; Nobuo Kato; Takeshi Sassa
Journal:  Biosci Biotechnol Biochem       Date:  2008-04-07       Impact factor: 2.043

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  29 in total

1.  Discovery of the Tiancilactone Antibiotics by Genome Mining of Atypical Bacterial Type II Diterpene Synthases.

Authors:  Liao-Bin Dong; Jeffrey D Rudolf; Ming-Rong Deng; Xiaohui Yan; Ben Shen
Journal:  Chembiochem       Date:  2018-05-27       Impact factor: 3.164

2.  A Mutasynthetic Library of Platensimycin and Platencin Analogues.

Authors:  Liao-Bin Dong; Jeffrey D Rudolf; Ben Shen
Journal:  Org Lett       Date:  2016-09-06       Impact factor: 6.005

3.  A genetically amenable platensimycin- and platencin-overproducer as a platform for biosynthetic explorations: a showcase of PtmO4, a long-chain acyl-CoA dehydrogenase.

Authors:  Jeffrey D Rudolf; Liao-Bin Dong; Tingting Huang; Ben Shen
Journal:  Mol Biosyst       Date:  2015-10

Review 4.  Platensimycin and platencin: Inspirations for chemistry, biology, enzymology, and medicine.

Authors:  Jeffrey D Rudolf; Liao-Bin Dong; Ben Shen
Journal:  Biochem Pharmacol       Date:  2016-11-16       Impact factor: 5.858

5.  Structural Studies of Geosmin Synthase, a Bifunctional Sesquiterpene Synthase with αα Domain Architecture That Catalyzes a Unique Cyclization-Fragmentation Reaction Sequence.

Authors:  Golda G Harris; Patrick M Lombardi; Travis A Pemberton; Tsutomu Matsui; Thomas M Weiss; Kathryn E Cole; Mustafa Köksal; Frank V Murphy; L Sangeetha Vedula; Wayne K W Chou; David E Cane; David W Christianson
Journal:  Biochemistry       Date:  2015-11-24       Impact factor: 3.162

Review 6.  Traversing the fungal terpenome.

Authors:  Maureen B Quin; Christopher M Flynn; Claudia Schmidt-Dannert
Journal:  Nat Prod Rep       Date:  2014-10       Impact factor: 13.423

7.  Biosynthetic Origin of the Ether Ring in Platensimycin.

Authors:  Jeffrey D Rudolf; Liao-Bin Dong; Karina Manoogian; Ben Shen
Journal:  J Am Chem Soc       Date:  2016-12-14       Impact factor: 15.419

8.  Crystallization and preliminary X-ray diffraction analysis of the diterpene cyclooctatin synthase (CYC) from Streptomyces sp. LZ35.

Authors:  Xiulei Zhang; Guijun Shang; Lichuan Gu; Yuemao Shen
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-02-20       Impact factor: 1.056

Review 9.  To gibberellins and beyond! Surveying the evolution of (di)terpenoid metabolism.

Authors:  Jiachen Zi; Sibongile Mafu; Reuben J Peters
Journal:  Annu Rev Plant Biol       Date:  2014-01-22       Impact factor: 26.379

Review 10.  Terpene synthases in disguise: enzymology, structure, and opportunities of non-canonical terpene synthases.

Authors:  Jeffrey D Rudolf; Chin-Yuan Chang
Journal:  Nat Prod Rep       Date:  2020-03-25       Impact factor: 13.423

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