Literature DB >> 27966343

Biosynthetic Origin of the Ether Ring in Platensimycin.

Jeffrey D Rudolf1, Liao-Bin Dong1, Karina Manoogian1, Ben Shen1.   

Abstract

Platensimycin (PTM) and platencin (PTN) are highly functionalized bacterial diterpenoid natural products that target bacterial and mammalian fatty acid synthases. PTM and PTN feature varying diterpene-derived ketolides that are linked to the same 3-amino-2,4-dihydroxybenzoic acid moiety. As a result, PTM is a selective inhibitor for FabF/FabB, while PTN is a dual inhibitor of FabF/FabB and FabH. We previously determined that the PTM cassette, consisting of five genes found in the ptm, but not ptn, gene cluster, partitions the biosynthesis of the PTM and PTN diterpene-derived ketolides. We now report investigation of the PTM cassette through the construction of diterpene production systems in E. coli and genetic manipulation in the PTM-PTN dual overproducer Streptomyces platensis SB12029, revealing two genes, ptmT3 and ptmO5, that are responsible for the biosynthetic divergence between the PTM and PTN diterpene-derived ketolides. PtmT3, a type I diterpene synthase, was determined to be a (16R)-ent-kauran-16-ol synthase, the first of its kind found in bacteria. PtmO5, a cytochrome P450 monooxygenase, is proposed to catalyze the formation of the characteristic 11S,16S-ether ring found in PTM. Inactivation of ptmO5 in SB12029 afforded the ΔptmO5 mutant SB12036 that accumulated nine PTM and PTN congeners, seven of which were new, including seven 11-deoxy-16R-hydroxy-PTM congeners. The two fully processed PTM analogues showed antibacterial activities, albeit lower than that of PTM, indicating that the ether ring, or minimally the stereochemistry of the hydroxyl group at C-16, is crucial for the activity of PTM.

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Year:  2016        PMID: 27966343      PMCID: PMC5466352          DOI: 10.1021/jacs.6b09818

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  40 in total

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4.  A genetically amenable platensimycin- and platencin-overproducer as a platform for biosynthetic explorations: a showcase of PtmO4, a long-chain acyl-CoA dehydrogenase.

Authors:  Jeffrey D Rudolf; Liao-Bin Dong; Tingting Huang; Ben Shen
Journal:  Mol Biosyst       Date:  2015-10

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Journal:  J Am Chem Soc       Date:  2006-09-13       Impact factor: 15.419

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Journal:  Nature       Date:  2006-05-18       Impact factor: 49.962

8.  Discovery of platencin, a dual FabF and FabH inhibitor with in vivo antibiotic properties.

Authors:  Jun Wang; Srinivas Kodali; Sang Ho Lee; Andrew Galgoci; Ronald Painter; Karen Dorso; Fred Racine; Mary Motyl; Lorraine Hernandez; Elizabeth Tinney; Steven L Colletti; Kithsiri Herath; Richard Cummings; Oscar Salazar; Ignacio González; Angela Basilio; Francisca Vicente; Olga Genilloud; Fernando Pelaez; Hiranthi Jayasuriya; Katherine Young; Doris F Cully; Sheo B Singh
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-24       Impact factor: 11.205

9.  Design, synthesis, and biological evaluation of platensimycin analogues with varying degrees of molecular complexity.

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Journal:  J Am Chem Soc       Date:  2008-09-05       Impact factor: 15.419

10.  Engineered Streptomyces platensis strains that overproduce antibiotics platensimycin and platencin.

Authors:  Michael J Smanski; Ryan M Peterson; Scott R Rajski; Ben Shen
Journal:  Antimicrob Agents Chemother       Date:  2009-01-21       Impact factor: 5.191

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  10 in total

1.  Cytochrome P450-Catalyzed Hydroxylation Initiating Ether Formation in Platensimycin Biosynthesis.

Authors:  Jeffrey D Rudolf; Liao-Bin Dong; Xiao Zhang; Hans Renata; Ben Shen
Journal:  J Am Chem Soc       Date:  2018-09-18       Impact factor: 15.419

Review 2.  Cytochromes P450 for natural product biosynthesis in Streptomyces: sequence, structure, and function.

Authors:  Jeffrey D Rudolf; Chin-Yuan Chang; Ming Ma; Ben Shen
Journal:  Nat Prod Rep       Date:  2017-08-30       Impact factor: 13.423

3.  Cryptic and Stereospecific Hydroxylation, Oxidation, and Reduction in Platensimycin and Platencin Biosynthesis.

Authors:  Liao-Bin Dong; Xiao Zhang; Jeffrey D Rudolf; Ming-Rong Deng; Edward Kalkreuter; Alexis J Cepeda; Hans Renata; Ben Shen
Journal:  J Am Chem Soc       Date:  2019-02-19       Impact factor: 15.419

4.  In vivo instability of platensimycin and platencin: Synthesis and biological evaluation of urea- and carbamate-platensimycin.

Authors:  Liao-Bin Dong; Jeffrey D Rudolf; Li Lin; Claudia Ruiz; Michael D Cameron; Ben Shen
Journal:  Bioorg Med Chem       Date:  2017-02-16       Impact factor: 3.641

5.  Biomimetic Stereoselective Sulfa-Michael Addition Leads to Platensimycin and Platencin Sulfur Analogues against Methicillin-Resistant Staphylococcus aureus.

Authors:  Lin Qiu; Kai Tian; Zhongqing Wen; Youchao Deng; Dingding Kang; Haoyu Liang; Xiangcheng Zhu; Ben Shen; Yanwen Duan; Yong Huang
Journal:  J Nat Prod       Date:  2018-02-01       Impact factor: 4.050

Review 6.  Terpene synthases in disguise: enzymology, structure, and opportunities of non-canonical terpene synthases.

Authors:  Jeffrey D Rudolf; Chin-Yuan Chang
Journal:  Nat Prod Rep       Date:  2020-03-25       Impact factor: 13.423

7.  Discovery and Biosynthesis of a Structurally Dynamic Antibacterial Diterpenoid.

Authors:  Chenxi Zhu; Baofu Xu; Donovon A Adpressa; Jeffrey D Rudolf; Sandra Loesgen
Journal:  Angew Chem Int Ed Engl       Date:  2021-05-14       Impact factor: 16.823

Review 8.  Bacterial terpenome.

Authors:  Jeffrey D Rudolf; Tyler A Alsup; Baofu Xu; Zining Li
Journal:  Nat Prod Rep       Date:  2021-05-26       Impact factor: 15.111

9.  Natural separation of the acyl-CoA ligase reaction results in a non-adenylating enzyme.

Authors:  Nan Wang; Jeffrey D Rudolf; Liao-Bin Dong; Jerzy Osipiuk; Catherine Hatzos-Skintges; Michael Endres; Chin-Yuan Chang; Gyorgy Babnigg; Andrzej Joachimiak; George N Phillips; Ben Shen
Journal:  Nat Chem Biol       Date:  2018-06-04       Impact factor: 15.040

10.  Biosynthesis of thiocarboxylic acid-containing natural products.

Authors:  Liao-Bin Dong; Jeffrey D Rudolf; Dingding Kang; Nan Wang; Cyndi Qixin He; Youchao Deng; Yong Huang; K N Houk; Yanwen Duan; Ben Shen
Journal:  Nat Commun       Date:  2018-06-18       Impact factor: 14.919

  10 in total

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