Literature DB >> 24471837

To gibberellins and beyond! Surveying the evolution of (di)terpenoid metabolism.

Jiachen Zi1, Sibongile Mafu, Reuben J Peters.   

Abstract

The diterpenoids are classically defined by their composition--four isoprenyl units (20 carbons)--and are generally derived from [E,E,E]-geranylgeranyl diphosphate (GGPP). Such metabolism seems to be ancient and has been extensively diversified, with ∼12,000 diterpenoid natural products known. Particularly notable are the gibberellin phytohormones, whose requisite biosynthesis has provided a genetic reservoir that gave rise to not only a large superfamily of ∼7,000 diterpenoids but also, to some degree, all plant terpenoid natural products. This review focuses on the diterpenoids, particularly the defining biosynthetic characteristics of the major superfamilies defined by the cyclization and/or rearrangement of GGPP catalyzed by diterpene synthases/cyclases, although it also includes some discussion of the important subsequent elaboration in the few cases where sufficient molecular genetic information is available. It additionally addresses the array of biological activity providing the selective pressures that drive the observed gene family expansion and diversification, along with biosynthetic gene clustering.

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Year:  2014        PMID: 24471837      PMCID: PMC4118669          DOI: 10.1146/annurev-arplant-050213-035705

Source DB:  PubMed          Journal:  Annu Rev Plant Biol        ISSN: 1543-5008            Impact factor:   26.379


  124 in total

1.  Cell type-specific chromatin decondensation of a metabolic gene cluster in oats.

Authors:  Eva Wegel; Rachil Koumproglou; Peter Shaw; Anne Osbourn
Journal:  Plant Cell       Date:  2009-12-29       Impact factor: 11.277

2.  The B73 maize genome: complexity, diversity, and dynamics.

Authors:  Patrick S Schnable; Doreen Ware; Robert S Fulton; Joshua C Stein; Fusheng Wei; Shiran Pasternak; Chengzhi Liang; Jianwei Zhang; Lucinda Fulton; Tina A Graves; Patrick Minx; Amy Denise Reily; Laura Courtney; Scott S Kruchowski; Chad Tomlinson; Cindy Strong; Kim Delehaunty; Catrina Fronick; Bill Courtney; Susan M Rock; Eddie Belter; Feiyu Du; Kyung Kim; Rachel M Abbott; Marc Cotton; Andy Levy; Pamela Marchetto; Kerri Ochoa; Stephanie M Jackson; Barbara Gillam; Weizu Chen; Le Yan; Jamey Higginbotham; Marco Cardenas; Jason Waligorski; Elizabeth Applebaum; Lindsey Phelps; Jason Falcone; Krishna Kanchi; Thynn Thane; Adam Scimone; Nay Thane; Jessica Henke; Tom Wang; Jessica Ruppert; Neha Shah; Kelsi Rotter; Jennifer Hodges; Elizabeth Ingenthron; Matt Cordes; Sara Kohlberg; Jennifer Sgro; Brandon Delgado; Kelly Mead; Asif Chinwalla; Shawn Leonard; Kevin Crouse; Kristi Collura; Dave Kudrna; Jennifer Currie; Ruifeng He; Angelina Angelova; Shanmugam Rajasekar; Teri Mueller; Rene Lomeli; Gabriel Scara; Ara Ko; Krista Delaney; Marina Wissotski; Georgina Lopez; David Campos; Michele Braidotti; Elizabeth Ashley; Wolfgang Golser; HyeRan Kim; Seunghee Lee; Jinke Lin; Zeljko Dujmic; Woojin Kim; Jayson Talag; Andrea Zuccolo; Chuanzhu Fan; Aswathy Sebastian; Melissa Kramer; Lori Spiegel; Lidia Nascimento; Theresa Zutavern; Beth Miller; Claude Ambroise; Stephanie Muller; Will Spooner; Apurva Narechania; Liya Ren; Sharon Wei; Sunita Kumari; Ben Faga; Michael J Levy; Linda McMahan; Peter Van Buren; Matthew W Vaughn; Kai Ying; Cheng-Ting Yeh; Scott J Emrich; Yi Jia; Ananth Kalyanaraman; An-Ping Hsia; W Brad Barbazuk; Regina S Baucom; Thomas P Brutnell; Nicholas C Carpita; Cristian Chaparro; Jer-Ming Chia; Jean-Marc Deragon; James C Estill; Yan Fu; Jeffrey A Jeddeloh; Yujun Han; Hyeran Lee; Pinghua Li; Damon R Lisch; Sanzhen Liu; Zhijie Liu; Dawn Holligan Nagel; Maureen C McCann; Phillip SanMiguel; Alan M Myers; Dan Nettleton; John Nguyen; Bryan W Penning; Lalit Ponnala; Kevin L Schneider; David C Schwartz; Anupma Sharma; Carol Soderlund; Nathan M Springer; Qi Sun; Hao Wang; Michael Waterman; Richard Westerman; Thomas K Wolfgruber; Lixing Yang; Yeisoo Yu; Lifang Zhang; Shiguo Zhou; Qihui Zhu; Jeffrey L Bennetzen; R Kelly Dawe; Jiming Jiang; Ning Jiang; Gernot G Presting; Susan R Wessler; Srinivas Aluru; Robert A Martienssen; Sandra W Clifton; W Richard McCombie; Rod A Wing; Richard K Wilson
Journal:  Science       Date:  2009-11-20       Impact factor: 47.728

Review 3.  Diversity, regulation, and evolution of the gibberellin biosynthetic pathway in fungi compared to plants and bacteria.

Authors:  Christiane Bömke; Bettina Tudzynski
Journal:  Phytochemistry       Date:  2009-06-25       Impact factor: 4.072

4.  A single residue switch for Mg(2+)-dependent inhibition characterizes plant class II diterpene cyclases from primary and secondary metabolism.

Authors:  Francis M Mann; Sladjana Prisic; Emily K Davenport; Mara K Determan; Robert M Coates; Reuben J Peters
Journal:  J Biol Chem       Date:  2010-04-29       Impact factor: 5.157

Review 5.  Hydrocarbon hydroxylation by cytochrome P450 enzymes.

Authors:  Paul R Ortiz de Montellano
Journal:  Chem Rev       Date:  2010-02-10       Impact factor: 60.622

Review 6.  New insights into short-chain prenyltransferases: structural features, evolutionary history and potential for selective inhibition.

Authors:  Sophie Vandermoten; Eric Haubruge; Michel Cusson
Journal:  Cell Mol Life Sci       Date:  2009-07-26       Impact factor: 9.261

7.  CYP76M7 is an ent-cassadiene C11alpha-hydroxylase defining a second multifunctional diterpenoid biosynthetic gene cluster in rice.

Authors:  Sivakumar Swaminathan; Dana Morrone; Qiang Wang; D Bruce Fulton; Reuben J Peters
Journal:  Plant Cell       Date:  2009-10-13       Impact factor: 11.277

8.  Identification and functional characterization of monofunctional ent-copalyl diphosphate and ent-kaurene synthases in white spruce reveal different patterns for diterpene synthase evolution for primary and secondary metabolism in gymnosperms.

Authors:  Christopher I Keeling; Harpreet K Dullat; Mack Yuen; Steven G Ralph; Sharon Jancsik; Jörg Bohlmann
Journal:  Plant Physiol       Date:  2009-12-31       Impact factor: 8.340

Review 9.  Monoterpene and sesquiterpene synthases and the origin of terpene skeletal diversity in plants.

Authors:  Jörg Degenhardt; Tobias G Köllner; Jonathan Gershenzon
Journal:  Phytochemistry       Date:  2009-09-28       Impact factor: 4.072

10.  A functional genomics approach to tanshinone biosynthesis provides stereochemical insights.

Authors:  Wei Gao; Matthew L Hillwig; Luqi Huang; Guanghong Cui; Xueyong Wang; Jianqiang Kong; Bin Yang; Reuben J Peters
Journal:  Org Lett       Date:  2009-11-19       Impact factor: 6.005

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  95 in total

1.  Combinatorial biosynthesis and the basis for substrate promiscuity in class I diterpene synthases.

Authors:  Meirong Jia; Sambit K Mishra; Samuel Tufts; Robert L Jernigan; Reuben J Peters
Journal:  Metab Eng       Date:  2019-06-17       Impact factor: 9.783

2.  Identification and functional characterization of diterpene synthases for triptolide biosynthesis from Tripterygium wilfordii.

Authors:  Ping Su; Hongyu Guan; Yujun Zhao; Yuru Tong; Meimei Xu; Yifeng Zhang; Tianyuan Hu; Jian Yang; Qiqing Cheng; Linhui Gao; Yujia Liu; Jiawei Zhou; Reuben J Peters; Luqi Huang; Wei Gao
Journal:  Plant J       Date:  2017-12-02       Impact factor: 6.417

3.  Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.

Authors:  Pascal Schläpfer; Peifen Zhang; Chuan Wang; Taehyong Kim; Michael Banf; Lee Chae; Kate Dreher; Arvind K Chavali; Ricardo Nilo-Poyanco; Thomas Bernard; Daniel Kahn; Seung Y Rhee
Journal:  Plant Physiol       Date:  2017-02-22       Impact factor: 8.340

4.  The RIN-MC Fusion of MADS-Box Transcription Factors Has Transcriptional Activity and Modulates Expression of Many Ripening Genes.

Authors:  Shan Li; Huijinlan Xu; Zheng Ju; Dongyan Cao; Hongliang Zhu; Daqi Fu; Donald Grierson; Guozheng Qin; Yunbo Luo; Benzhong Zhu
Journal:  Plant Physiol       Date:  2017-11-13       Impact factor: 8.340

5.  Biosynthesis of Diterpenoids in Tripterygium Adventitious Root Cultures.

Authors:  Fainmarinat S Inabuy; Justin T Fischedick; Iris Lange; Michael Hartmann; Narayanan Srividya; Amber N Parrish; Meimei Xu; Reuben J Peters; B Markus Lange
Journal:  Plant Physiol       Date:  2017-07-27       Impact factor: 8.340

6.  Cryptic and Stereospecific Hydroxylation, Oxidation, and Reduction in Platensimycin and Platencin Biosynthesis.

Authors:  Liao-Bin Dong; Xiao Zhang; Jeffrey D Rudolf; Ming-Rong Deng; Edward Kalkreuter; Alexis J Cepeda; Hans Renata; Ben Shen
Journal:  J Am Chem Soc       Date:  2019-02-19       Impact factor: 15.419

7.  Optimization of recombinant expression enables discovery of novel cytochrome P450 activity in rice diterpenoid biosynthesis.

Authors:  Naoki Kitaoka; Yisheng Wu; Meimei Xu; Reuben J Peters
Journal:  Appl Microbiol Biotechnol       Date:  2015-03-12       Impact factor: 4.813

8.  Convergence and divergence of bitterness biosynthesis and regulation in Cucurbitaceae.

Authors:  Yuan Zhou; Yongshuo Ma; Jianguo Zeng; Lixin Duan; Xiaofeng Xue; Huaisong Wang; Tao Lin; Zhiqiang Liu; Kewu Zeng; Yang Zhong; Shu Zhang; Qun Hu; Min Liu; Huimin Zhang; James Reed; Tessa Moses; Xinyan Liu; Peng Huang; Zhixing Qing; Xiubin Liu; Pengfei Tu; Hanhui Kuang; Zhonghua Zhang; Anne Osbourn; Dae-Kyun Ro; Yi Shang; Sanwen Huang
Journal:  Nat Plants       Date:  2016-11-28       Impact factor: 15.793

9.  Why are momilactones always associated with biosynthetic gene clusters in plants?

Authors:  Juan Zhang; Reuben J Peters
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-02       Impact factor: 11.205

10.  Biochemical characterization of the castor bean ent-kaurene synthase(-like) family supports quantum chemical view of diterpene cyclization.

Authors:  Alana J Jackson; David M Hershey; Taylor Chesnut; Meimei Xu; Reuben J Peters
Journal:  Phytochemistry       Date:  2014-05-05       Impact factor: 4.072

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