Literature DB >> 22358840

Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.

Thomas Becker1, Sibylle Franckenberg, Stephan Wickles, Christopher J Shoemaker, Andreas M Anger, Jean-Paul Armache, Heidemarie Sieber, Charlotte Ungewickell, Otto Berninghausen, Ingo Daberkow, Annette Karcher, Michael Thomm, Karl-Peter Hopfner, Rachel Green, Roland Beckmann.   

Abstract

Ribosome-driven protein biosynthesis is comprised of four phases: initiation, elongation, termination and recycling. In bacteria, ribosome recycling requires ribosome recycling factor and elongation factor G, and several structures of bacterial recycling complexes have been determined. In the eukaryotic and archaeal kingdoms, however, recycling involves the ABC-type ATPase ABCE1 and little is known about its structural basis. Here we present cryo-electron microscopy reconstructions of eukaryotic and archaeal ribosome recycling complexes containing ABCE1 and the termination factor paralogue Pelota. These structures reveal the overall binding mode of ABCE1 to be similar to canonical translation factors. Moreover, the iron-sulphur cluster domain of ABCE1 interacts with and stabilizes Pelota in a conformation that reaches towards the peptidyl transferase centre, thus explaining how ABCE1 may stimulate peptide-release activity of canonical termination factors. Using the mechanochemical properties of ABCE1, a conserved mechanism in archaea and eukaryotes is suggested that couples translation termination to recycling, and eventually to re-initiation.

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Year:  2012        PMID: 22358840      PMCID: PMC6878762          DOI: 10.1038/nature10829

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  45 in total

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Authors:  Karl-Peter Hopfner; John A Tainer
Journal:  Curr Opin Struct Biol       Date:  2003-04       Impact factor: 6.809

2.  Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation.

Authors:  Meenakshi K Doma; Roy Parker
Journal:  Nature       Date:  2006-03-23       Impact factor: 49.962

3.  Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome.

Authors:  Thomas Becker; Jean-Paul Armache; Alexander Jarasch; Andreas M Anger; Elizabeth Villa; Heidemarie Sieber; Basma Abdel Motaal; Thorsten Mielke; Otto Berninghausen; Roland Beckmann
Journal:  Nat Struct Mol Biol       Date:  2011-05-29       Impact factor: 15.369

4.  Functional link between ribosome formation and biogenesis of iron-sulfur proteins.

Authors:  Alexander Yarunin; Vikram Govind Panse; Elisabeth Petfalski; Christophe Dez; David Tollervey; Eduard C Hurt
Journal:  EMBO J       Date:  2005-01-20       Impact factor: 11.598

5.  The crystal structure of human eukaryotic release factor eRF1--mechanism of stop codon recognition and peptidyl-tRNA hydrolysis.

Authors:  H Song; P Mugnier; A K Das; H M Webb; D R Evans; M F Tuite; B A Hemmings; D Barford
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

6.  Structural organization of essential iron-sulfur clusters in the evolutionarily highly conserved ATP-binding cassette protein ABCE1.

Authors:  Dominik Barthelme; Urte Scheele; Stephanie Dinkelaker; Adam Janoschka; Fraser Macmillan; Sonja-Verena Albers; Arnold J M Driessen; Marco Salamone Stagni; Eckhard Bill; Wolfram Meyer-Klaucke; Volker Schünemann; Robert Tampé
Journal:  J Biol Chem       Date:  2007-03-12       Impact factor: 5.157

7.  A highly productive system for cell-free protein synthesis using a lysate of the hyperthermophilic archaeon, Thermococcus kodakaraensis.

Authors:  Takashi Endoh; Tamotsu Kanai; Tadayuki Imanaka
Journal:  Appl Microbiol Biotechnol       Date:  2006-12-13       Impact factor: 4.813

8.  ATP binding to the motor domain from an ABC transporter drives formation of a nucleotide sandwich dimer.

Authors:  Paul C Smith; Nathan Karpowich; Linda Millen; Jonathan E Moody; Jane Rosen; Philip J Thomas; John F Hunt
Journal:  Mol Cell       Date:  2002-07       Impact factor: 17.970

9.  The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.

Authors:  T Martin Schmeing; Rebecca M Voorhees; Ann C Kelley; Yong-Gui Gao; Frank V Murphy; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2009-10-15       Impact factor: 47.728

10.  The structure of the ribosome with elongation factor G trapped in the posttranslocational state.

Authors:  Yong-Gui Gao; Maria Selmer; Christine M Dunham; Albert Weixlbaumer; Ann C Kelley; V Ramakrishnan
Journal:  Science       Date:  2009-10-30       Impact factor: 47.728

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  110 in total

1.  Translation drives mRNA quality control.

Authors:  Christopher J Shoemaker; Rachel Green
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

2.  A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits.

Authors:  Bethany S Strunk; Megan N Novak; Crystal L Young; Katrin Karbstein
Journal:  Cell       Date:  2012-07-06       Impact factor: 41.582

3.  Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3'UTRs In Vivo.

Authors:  David J Young; Nicholas R Guydosh; Fan Zhang; Alan G Hinnebusch; Rachel Green
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

Review 4.  How HIV-1 Gag assembles in cells: Putting together pieces of the puzzle.

Authors:  Jaisri R Lingappa; Jonathan C Reed; Motoko Tanaka; Kasana Chutiraka; Bridget A Robinson
Journal:  Virus Res       Date:  2014-07-24       Impact factor: 3.303

5.  Structure of the 40S-ABCE1 post-splitting complex in ribosome recycling and translation initiation.

Authors:  André Heuer; Milan Gerovac; Christian Schmidt; Simon Trowitzsch; Anne Preis; Peter Kötter; Otto Berninghausen; Thomas Becker; Roland Beckmann; Robert Tampé
Journal:  Nat Struct Mol Biol       Date:  2017-04-03       Impact factor: 15.369

Review 6.  Ribosome pausing, arrest and rescue in bacteria and eukaryotes.

Authors:  Allen R Buskirk; Rachel Green
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

Review 7.  Nonsense-Mediated mRNA Decay Begins Where Translation Ends.

Authors:  Evangelos D Karousis; Oliver Mühlemann
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

8.  Dom34 rescues ribosomes in 3' untranslated regions.

Authors:  Nicholas R Guydosh; Rachel Green
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

9.  Cryo-EM structure of the mammalian eukaryotic release factor eRF1-eRF3-associated termination complex.

Authors:  Derek Taylor; Anett Unbehaun; Wen Li; Sanchaita Das; Jianlin Lei; Hstau Y Liao; Robert A Grassucci; Tatyana V Pestova; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

Review 10.  Ribosome-based quality control of mRNA and nascent peptides.

Authors:  Carrie L Simms; Erica N Thomas; Hani S Zaher
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-05-18       Impact factor: 9.957

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