Literature DB >> 23091004

Cryo-EM structure of the mammalian eukaryotic release factor eRF1-eRF3-associated termination complex.

Derek Taylor1, Anett Unbehaun, Wen Li, Sanchaita Das, Jianlin Lei, Hstau Y Liao, Robert A Grassucci, Tatyana V Pestova, Joachim Frank.   

Abstract

Eukaryotic translation termination results from the complex functional interplay between two eukaryotic release factors, eRF1 and eRF3, and the ribosome, in which GTP hydrolysis by eRF3 couples codon recognition with peptidyl-tRNA hydrolysis by eRF1. Here, using cryo-electron microscopy (cryo-EM) and flexible fitting, we determined the structure of eRF1-eRF3-guanosine 5'-[β,γ-imido]triphosphate (GMPPNP)-bound ribosomal pretermination complex (pre-TC), which corresponds to the initial, pre-GTP hydrolysis stage of factor attachment. Our results show that eukaryotic translation termination involves a network of interactions between the two release factors and the ribosome. Our structure provides mechanistic insight into the coordination between GTP hydrolysis by eRF3 and subsequent peptide release by eRF1.

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Year:  2012        PMID: 23091004      PMCID: PMC3494903          DOI: 10.1073/pnas.1216730109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  52 in total

1.  Conversion of omnipotent translation termination factor eRF1 into ciliate-like UGA-only unipotent eRF1.

Authors:  Alim Seit-Nebi; Ludmila Frolova; Lev Kisselev
Journal:  EMBO Rep       Date:  2002-08-16       Impact factor: 8.807

2.  Locking and unlocking of ribosomal motions.

Authors:  Mikel Valle; Andrey Zavialov; Jayati Sengupta; Urmila Rawat; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

3.  GTP hydrolysis by eRF3 facilitates stop codon decoding during eukaryotic translation termination.

Authors:  Joe Salas-Marco; David M Bedwell
Journal:  Mol Cell Biol       Date:  2004-09       Impact factor: 4.272

4.  Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study.

Authors:  B K Rath; J Frank
Journal:  J Struct Biol       Date:  2004 Jan-Feb       Impact factor: 2.867

5.  Crystal structure and functional analysis of the eukaryotic class II release factor eRF3 from S. pombe.

Authors:  Chunguang Kong; Koichi Ito; Martin A Walsh; Miki Wada; Yuying Liu; Sundramurthy Kumar; David Barford; Yoshikazu Nakamura; Haiwei Song
Journal:  Mol Cell       Date:  2004-04-23       Impact factor: 17.970

6.  Identification of eRF1 residues that play critical and complementary roles in stop codon recognition.

Authors:  Sara E Conard; Jessica Buckley; Mai Dang; Gregory J Bedwell; Richard L Carter; Mohamed Khass; David M Bedwell
Journal:  RNA       Date:  2012-04-27       Impact factor: 4.942

7.  Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit.

Authors:  C M Spahn; J S Kieft; R A Grassucci; P A Penczek; K Zhou; J A Doudna; J Frank
Journal:  Science       Date:  2001-03-09       Impact factor: 47.728

8.  A novel stop codon readthrough mechanism produces functional Headcase protein in Drosophila trachea.

Authors:  P Steneberg; C Samakovlis
Journal:  EMBO Rep       Date:  2001-07       Impact factor: 8.807

9.  The crystal structure of human eukaryotic release factor eRF1--mechanism of stop codon recognition and peptidyl-tRNA hydrolysis.

Authors:  H Song; P Mugnier; A K Das; H M Webb; D R Evans; M F Tuite; B A Hemmings; D Barford
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

Review 10.  The guanine nucleotide-binding switch in three dimensions.

Authors:  I R Vetter; A Wittinghofer
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

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  34 in total

Review 1.  Hydroxylation and translational adaptation to stress: some answers lie beyond the STOP codon.

Authors:  M J Katz; L Gándara; A L De Lella Ezcurra; P Wappner
Journal:  Cell Mol Life Sci       Date:  2016-02-13       Impact factor: 9.261

2.  Defining the protein complexome of translation termination factor eRF1: Identification of four novel eRF1-containing complexes that range from 20S to 57S in size.

Authors:  Clyde L Denis; Roy Richardson; Shiwha Park; Chongxu Zhang; Wen Xi; Thomas M Laue; Xin Wang
Journal:  Proteins       Date:  2017-11-27

3.  Crystallization and preliminary X-ray analysis of the C-terminal fragment of Ski7 from Saccharomyces cerevisiae.

Authors:  Ji-Young Lee; Si Hoon Park; Byung-Cheon Jeong; Hyun Kyu Song
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-08-27       Impact factor: 1.056

Review 4.  Disordered proteinaceous machines.

Authors:  Monika Fuxreiter; Ágnes Tóth-Petróczy; Daniel A Kraut; Andreas Matouschek; Andreas T Matouschek; Roderick Y H Lim; Bin Xue; Lukasz Kurgan; Vladimir N Uversky
Journal:  Chem Rev       Date:  2014-04-04       Impact factor: 60.622

5.  Functional analysis of the uL11 protein impact on translational machinery.

Authors:  Leszek Wawiórka; Eliza Molestak; Monika Szajwaj; Barbara Michalec-Wawiórka; Aleksandra Boguszewska; Lidia Borkiewicz; Vladyslava Liudkovska; Joanna Kufel; Marek Tchórzewski
Journal:  Cell Cycle       Date:  2016       Impact factor: 4.534

Review 6.  Detection and Degradation of Stalled Nascent Chains via Ribosome-Associated Quality Control.

Authors:  Cole S Sitron; Onn Brandman
Journal:  Annu Rev Biochem       Date:  2020-06-20       Impact factor: 23.643

7.  Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.

Authors:  Cha San Koh; Axel F Brilot; Nikolaus Grigorieff; Andrei A Korostelev
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-09       Impact factor: 11.205

8.  Cryo-EM of ribosomal 80S complexes with termination factors reveals the translocated cricket paralysis virus IRES.

Authors:  Margarita Muhs; Tarek Hilal; Thorsten Mielke; Maxim A Skabkin; Karissa Y Sanbonmatsu; Tatyana V Pestova; Christian M T Spahn
Journal:  Mol Cell       Date:  2015-01-15       Impact factor: 17.970

9.  Reinitiation and other unconventional posttermination events during eukaryotic translation.

Authors:  Maxim A Skabkin; Olga V Skabkina; Christopher U T Hellen; Tatyana V Pestova
Journal:  Mol Cell       Date:  2013-06-27       Impact factor: 17.970

Review 10.  Single-Molecule Fluorescence Applied to Translation.

Authors:  Arjun Prabhakar; Elisabetta Viani Puglisi; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

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