Literature DB >> 22352964

Electronic barcoding of a viral gene at the single-molecule level.

Alon Singer1, Srinivas Rapireddy, Danith H Ly, Amit Meller.   

Abstract

A new single-molecule approach for rapid and purely electronic discrimination among similar genes is presented. Combining solid-state nanopores and γ-modified synthetic peptide nucleic acid probes, we accurately barcode genes by counting the number of probes attached to each gene and measuring their relative spacing. We illustrate our method by sensing individual genes from two highly similar human immunodeficiency virus subtypes, demonstrating feasibility of a novel, single-molecule diagnostic platform for rapid pathogen classification.
© 2012 American Chemical Society

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Year:  2012        PMID: 22352964      PMCID: PMC3572535          DOI: 10.1021/nl300372a

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  21 in total

Review 1.  Peptide nucleic acids (PNA) in chemical biology and drug discovery.

Authors:  Peter E Nielsen
Journal:  Chem Biodivers       Date:  2010-04       Impact factor: 2.408

2.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

Authors:  Meni Wanunu; Tali Dadosh; Vishva Ray; Jingmin Jin; Larry McReynolds; Marija Drndić
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

Review 3.  Emerging nanotechnology-based strategies for the identification of microbial pathogenesis.

Authors:  Charalambos Kaittanis; Santimukul Santra; J Manuel Perez
Journal:  Adv Drug Deliv Rev       Date:  2009-11-13       Impact factor: 15.470

4.  Charting a course for genomic medicine from base pairs to bedside.

Authors:  Eric D Green; Mark S Guyer
Journal:  Nature       Date:  2011-02-10       Impact factor: 49.962

Review 5.  Nanopore sensors for nucleic acid analysis.

Authors:  Bala Murali Venkatesan; Rashid Bashir
Journal:  Nat Nanotechnol       Date:  2011-09-18       Impact factor: 39.213

6.  Synthesis and characterization of conformationally preorganized, (R)-diethylene glycol-containing γ-peptide nucleic acids with superior hybridization properties and water solubility.

Authors:  Bichismita Sahu; Iulia Sacui; Srinivas Rapireddy; Kimberly J Zanotti; Raman Bahal; Bruce A Armitage; Danith H Ly
Journal:  J Org Chem       Date:  2011-06-15       Impact factor: 4.354

Review 7.  Advantages of peptide nucleic acids as diagnostic platforms for detection of nucleic acids in resource-limited settings.

Authors:  Ning Zhang; Daniel H Appella
Journal:  J Infect Dis       Date:  2010-04-15       Impact factor: 5.226

8.  Nanopore based sequence specific detection of duplex DNA for genomic profiling.

Authors:  Alon Singer; Meni Wanunu; Will Morrison; Heiko Kuhn; Maxim Frank-Kamenetskii; Amit Meller
Journal:  Nano Lett       Date:  2010-02-10       Impact factor: 11.189

9.  Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient.

Authors:  Meni Wanunu; Will Morrison; Yitzhak Rabin; Alexander Y Grosberg; Amit Meller
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

10.  Nanopore-based detection of circulating microRNAs in lung cancer patients.

Authors:  Yong Wang; Dali Zheng; Qiulin Tan; Michael X Wang; Li-Qun Gu
Journal:  Nat Nanotechnol       Date:  2011-09-04       Impact factor: 39.213

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  32 in total

Review 1.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

2.  Direct Sensing and Discrimination among Ubiquitin and Ubiquitin Chains Using Solid-State Nanopores.

Authors:  Iftach Nir; Diana Huttner; Amit Meller
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

Review 3.  Applications of PNA-laden nanoparticles for hematological disorders.

Authors:  Shipra Malik; Stanley Oyaghire; Raman Bahal
Journal:  Cell Mol Life Sci       Date:  2018-11-29       Impact factor: 9.261

4.  Toward detection of DNA-bound proteins using solid-state nanopores: insights from computer simulations.

Authors:  Jeffrey Comer; Anthony Ho; Aleksei Aksimentiev
Journal:  Electrophoresis       Date:  2012-11-12       Impact factor: 3.535

5.  A Solid-State Hard Microfluidic-Nanopore Biosensor with Multilayer Fluidics and On-Chip Bioassay/Purification Chamber.

Authors:  Nitinun Varongchayakul; Joseph Hersey; Allison Squires; Amit Meller; Mark Grinstaff
Journal:  Adv Funct Mater       Date:  2018-10-16       Impact factor: 18.808

6.  Next generation miRNA inhibition using short anti-seed PNAs encapsulated in PLGA nanoparticles.

Authors:  Shipra Malik; Jihoon Lim; Frank J Slack; Demetrios T Braddock; Raman Bahal
Journal:  J Control Release       Date:  2020-08-21       Impact factor: 9.776

Review 7.  DNA sequencing and bar-coding using solid-state nanopores.

Authors:  Evrim Atas; Alon Singer; Amit Meller
Journal:  Electrophoresis       Date:  2012-10-30       Impact factor: 3.535

8.  A nanopore-nanofiber mesh biosensor to control DNA translocation.

Authors:  Allison H Squires; Joseph S Hersey; Mark W Grinstaff; Amit Meller
Journal:  J Am Chem Soc       Date:  2013-11-06       Impact factor: 15.419

9.  Slow DNA transport through nanopores in hafnium oxide membranes.

Authors:  Joseph Larkin; Robert Henley; David C Bell; Tzahi Cohen-Karni; Jacob K Rosenstein; Meni Wanunu
Journal:  ACS Nano       Date:  2013-10-04       Impact factor: 15.881

10.  Electron beam induced local crystallization of HfO2 nanopores for biosensing applications.

Authors:  Jiwook Shim; Jose A Rivera; Rashid Bashir
Journal:  Nanoscale       Date:  2013-08-15       Impact factor: 7.790

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