Literature DB >> 20225945

Advantages of peptide nucleic acids as diagnostic platforms for detection of nucleic acids in resource-limited settings.

Ning Zhang1, Daniel H Appella.   

Abstract

Peptide nucleic acids are a class of nondegradable oligonucleotide mimics that can be used as probes for nucleic acid sequences and could convey the necessary stability to be a diagnostic tool for use in a resource-limited setting. In this review, there is a brief introduction to the field of peptide nucleic acids and their potential benefits as probes for DNA and RNA sequences, followed by highlights of ways by which peptide nucleic acids could benefit a number of established diagnostic tools for human immunodeficiency virus detection.

Entities:  

Keywords:  Diagnostic; HIV; NAT; PNA

Mesh:

Substances:

Year:  2010        PMID: 20225945      PMCID: PMC2841040          DOI: 10.1086/650389

Source DB:  PubMed          Journal:  J Infect Dis        ISSN: 0022-1899            Impact factor:   5.226


  19 in total

1.  Short PNA molecular beacons for real-time PCR allelic discrimination of single nucleotide polymorphisms.

Authors:  Kenneth Petersen; Ulla Vogel; Eszter Rockenbauer; Kirsten Vang Nielsen; Steen Kølvraa; Lars Bolund; Bjørn Nexø
Journal:  Mol Cell Probes       Date:  2004-04       Impact factor: 2.365

2.  Evaluation of a real-time nucleic acid sequence-based amplification assay using molecular beacons for detection of human immunodeficiency virus type 1.

Authors:  D R McClernon; C Vavro; M St Clair
Journal:  J Clin Microbiol       Date:  2006-06       Impact factor: 5.948

3.  Gamma-substituted peptide nucleic acids constructed from L-lysine are a versatile scaffold for multifunctional display.

Authors:  Ethan A Englund; Daniel H Appella
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

Review 4.  Access to diagnostics in support of HIV/AIDS and tuberculosis treatment in developing countries.

Authors:  Gary M Cohen
Journal:  AIDS       Date:  2007-07       Impact factor: 4.177

5.  Colorimetric detection of anthrax DNA with a Peptide nucleic acid sandwich-hybridization assay.

Authors:  Ning Zhang; Daniel H Appella
Journal:  J Am Chem Soc       Date:  2007-06-15       Impact factor: 15.419

6.  Target-catalyzed transfer reactions for the amplified detection of RNA.

Authors:  Tom N Grossmann; Lars Röglin; Oliver Seitz
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

7.  Hybridization of DNA and PNA molecular beacons to single-stranded and double-stranded DNA targets.

Authors:  Heiko Kuhn; Vadim V Demidov; James M Coull; Mark J Fiandaca; Brian D Gildea; Maxim D Frank-Kamenetskii
Journal:  J Am Chem Soc       Date:  2002-02-13       Impact factor: 15.419

8.  EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy.

Authors:  J Guillermo Paez; Pasi A Jänne; Jeffrey C Lee; Sean Tracy; Heidi Greulich; Stacey Gabriel; Paula Herman; Frederic J Kaye; Neal Lindeman; Titus J Boggon; Katsuhiko Naoki; Hidefumi Sasaki; Yoshitaka Fujii; Michael J Eck; William R Sellers; Bruce E Johnson; Matthew Meyerson
Journal:  Science       Date:  2004-04-29       Impact factor: 47.728

9.  Limitations of TaqMan PCR for detecting divergent viral pathogens illustrated by hepatitis A, B, C, and E viruses and human immunodeficiency virus.

Authors:  Shea N Gardner; Thomas A Kuczmarski; Elizabeth A Vitalis; Tom R Slezak
Journal:  J Clin Microbiol       Date:  2003-06       Impact factor: 5.948

10.  Thermodynamically modulated partially double-stranded linear DNA probe design for homogeneous real-time PCR.

Authors:  Shihai Huang; John Salituro; Ning Tang; Ka-Cheung Luk; John Hackett; Priscilla Swanson; Gavin Cloherty; Wai-Bing Mak; John Robinson; Klara Abravaya
Journal:  Nucleic Acids Res       Date:  2007-08-09       Impact factor: 16.971

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  11 in total

Review 1.  Insights on chiral, backbone modified peptide nucleic acids: Properties and biological activity.

Authors:  Maria Moccia; Mauro F A Adamo; Michele Saviano
Journal:  Artif DNA PNA XNA       Date:  2016-01-11

Review 2.  Strategies in Ebola virus disease (EVD) diagnostics at the point of care.

Authors:  Chad T Coarsey; Nwadiuto Esiobu; Ramswamy Narayanan; Mirjana Pavlovic; Hadi Shafiee; Waseem Asghar
Journal:  Crit Rev Microbiol       Date:  2017-04-25       Impact factor: 7.624

3.  Nanoelectronic three-dimensional (3D) nanotip sensing array for real-time, sensitive, label-free sequence specific detection of nucleic acids.

Authors:  Rahim Esfandyarpour; Lu Yang; Zahra Koochak; James S Harris; Ronald W Davis
Journal:  Biomed Microdevices       Date:  2016-02       Impact factor: 2.838

4.  Electronic barcoding of a viral gene at the single-molecule level.

Authors:  Alon Singer; Srinivas Rapireddy; Danith H Ly; Amit Meller
Journal:  Nano Lett       Date:  2012-02-24       Impact factor: 11.189

5.  Cyclopentane peptide nucleic acid: Gold nanoparticle conjugates for the detection of nucleic acids in a microfluidic format.

Authors:  Harsha Amarasekara; Kaylyn M Oshaben; Kendra B Jeans; Paniz Rezvan Sangsari; Nicole Y Morgan; Brian O'Farrell; Daniel H Appella
Journal:  Biopolymers       Date:  2021-11-23       Impact factor: 2.240

6.  Cyclopentane-peptide nucleic acids for qualitative, quantitative, and repetitive detection of nucleic acids.

Authors:  Christopher M Micklitsch; Bereket Yemane Oquare; Chao Zhao; Daniel H Appella
Journal:  Anal Chem       Date:  2012-12-18       Impact factor: 6.986

Review 7.  DNA sequencing and bar-coding using solid-state nanopores.

Authors:  Evrim Atas; Alon Singer; Amit Meller
Journal:  Electrophoresis       Date:  2012-10-30       Impact factor: 3.535

8.  PNA bearing 5-azidomethyluracil: a novel approach for solid and solution phase modification.

Authors:  Alex Manicardi; Alessandro Accetta; Tullia Tedeschi; Stefano Sforza; Rosangela Marchelli; Roberto Corradini
Journal:  Artif DNA PNA XNA       Date:  2012-04-01

9.  Three minimal sequences found in Ebola virus genomes and absent from human DNA.

Authors:  Raquel M Silva; Diogo Pratas; Luísa Castro; Armando J Pinho; Paulo J S G Ferreira
Journal:  Bioinformatics       Date:  2015-04-02       Impact factor: 6.937

10.  Development of a new method based on unmodified gold nanoparticles and peptide nucleic acids for detecting bovine viral diarrhea virus-RNA.

Authors:  Maryam Askaravi; Seyedeh Elham Rezatofighi; Saadat Rastegarzadeh; Masoud Reza Seifi Abad Shapouri
Journal:  AMB Express       Date:  2017-06-26       Impact factor: 3.298

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