Literature DB >> 21926981

Nanopore sensors for nucleic acid analysis.

Bala Murali Venkatesan1, Rashid Bashir.   

Abstract

Nanopore analysis is an emerging technique that involves using a voltage to drive molecules through a nanoscale pore in a membrane between two electrolytes, and monitoring how the ionic current through the nanopore changes as single molecules pass through it. This approach allows charged polymers (including single-stranded DNA, double-stranded DNA and RNA) to be analysed with subnanometre resolution and without the need for labels or amplification. Recent advances suggest that nanopore-based sensors could be competitive with other third-generation DNA sequencing technologies, and may be able to rapidly and reliably sequence the human genome for under $1,000. In this article we review the use of nanopore technology in DNA sequencing, genetics and medical diagnostics.

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Year:  2011        PMID: 21926981     DOI: 10.1038/nnano.2011.129

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  95 in total

1.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

2.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

Authors:  Meni Wanunu; Tali Dadosh; Vishva Ray; Jingmin Jin; Larry McReynolds; Marija Drndić
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

3.  Identifying single bases in a DNA oligomer with electron tunnelling.

Authors:  Shuo Huang; Jin He; Shuai Chang; Peiming Zhang; Feng Liang; Shengqin Li; Michael Tuchband; Alexander Fuhrmann; Robert Ros; Stuart Lindsay
Journal:  Nat Nanotechnol       Date:  2010-11-14       Impact factor: 39.213

4.  Discovery of recurrent t(6;7)(p25.3;q32.3) translocations in ALK-negative anaplastic large cell lymphomas by massively parallel genomic sequencing.

Authors:  Andrew L Feldman; Ahmet Dogan; David I Smith; Mark E Law; Stephen M Ansell; Sarah H Johnson; Julie C Porcher; Nazan Ozsan; Eric D Wieben; Bruce W Eckloff; George Vasmatzis
Journal:  Blood       Date:  2010-10-28       Impact factor: 22.113

5.  Slowing DNA translocation in a solid-state nanopore.

Authors:  Daniel Fologea; James Uplinger; Brian Thomas; David S McNabb; Jiali Li
Journal:  Nano Lett       Date:  2005-09       Impact factor: 11.189

Review 6.  Solid-state nanopore technologies for nanopore-based DNA analysis.

Authors:  Ken Healy; Birgitta Schiedt; Alan P Morrison
Journal:  Nanomedicine (Lond)       Date:  2007-12       Impact factor: 5.307

7.  DNA translocation governed by interactions with solid-state nanopores.

Authors:  Meni Wanunu; Jason Sutin; Ben McNally; Andrew Chow; Amit Meller
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

8.  Fast DNA sequencing with a graphene-based nanochannel device.

Authors:  Seung Kyu Min; Woo Youn Kim; Yeonchoo Cho; Kwang S Kim
Journal:  Nat Nanotechnol       Date:  2011-02-06       Impact factor: 39.213

Review 9.  Nanopore analysis of nucleic acids bound to exonucleases and polymerases.

Authors:  David Deamer
Journal:  Annu Rev Biophys       Date:  2010       Impact factor: 12.981

10.  Stability of DNA-tethered lipid membranes with mobile tethers.

Authors:  Minsub Chung; Steven G Boxer
Journal:  Langmuir       Date:  2011-03-31       Impact factor: 3.882

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  240 in total

1.  Stacked graphene-Al2O3 nanopore sensors for sensitive detection of DNA and DNA-protein complexes.

Authors:  Bala Murali Venkatesan; David Estrada; Shouvik Banerjee; Xiaozhong Jin; Vincent E Dorgan; Myung-Ho Bae; Narayana R Aluru; Eric Pop; Rashid Bashir
Journal:  ACS Nano       Date:  2011-12-23       Impact factor: 15.881

2.  DNA base-specific modulation of microampere transverse edge currents through a metallic graphene nanoribbon with a nanopore.

Authors:  Kamal K Saha; Marija Drndić; Branislav K Nikolić
Journal:  Nano Lett       Date:  2011-12-15       Impact factor: 11.189

3.  Nanopores: Tiny holes with great promise.

Authors:  Dario Anselmetti
Journal:  Nat Nanotechnol       Date:  2012-02-06       Impact factor: 39.213

4.  When less is more in a nanopore.

Authors:  Li-Qun Gu; Brandon Ritzo; Yong Wang
Journal:  Nat Nanotechnol       Date:  2012-04-05       Impact factor: 39.213

5.  Nanopores as protein sensors.

Authors:  Stefan Howorka; Zuzanna S Siwy
Journal:  Nat Biotechnol       Date:  2012-06-07       Impact factor: 54.908

6.  Detection and Mapping of DNA Methylation with 2D Material Nanopores.

Authors:  Hu Qiu; Aditya Sarathy; Klaus Schulten; Jean-Pierre Leburton
Journal:  NPJ 2D Mater Appl       Date:  2017-04-11

7.  DNA translocating through a carbon nanotube can increase ionic current.

Authors:  Jae Hyun Park; Jin He; Brett Gyarfas; Stuart Lindsay; Predrag S Krstić
Journal:  Nanotechnology       Date:  2012-10-22       Impact factor: 3.874

8.  Photocleavable DNA barcode-antibody conjugates allow sensitive and multiplexed protein analysis in single cells.

Authors:  Sarit S Agasti; Monty Liong; Vanessa M Peterson; Hakho Lee; Ralph Weissleder
Journal:  J Am Chem Soc       Date:  2012-11-02       Impact factor: 15.419

Review 9.  Micro- and nanoscale devices for the investigation of epigenetics and chromatin dynamics.

Authors:  Carlos A Aguilar; Harold G Craighead
Journal:  Nat Nanotechnol       Date:  2013-10       Impact factor: 39.213

10.  Oriented single directional insertion of nanochannel of bacteriophage SPP1 DNA packaging motor into lipid bilayer via polar hydrophobicity.

Authors:  Zhi Zhou; Zhouxiang Ji; Shaoying Wang; Farzin Haque; Peixuan Guo
Journal:  Biomaterials       Date:  2016-08-04       Impact factor: 12.479

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