Literature DB >> 24083444

Slow DNA transport through nanopores in hafnium oxide membranes.

Joseph Larkin1, Robert Henley1, David C Bell2, Tzahi Cohen-Karni3, Jacob K Rosenstein4, Meni Wanunu1.   

Abstract

We present a study of double- and single-stranded DNA transport through nanopores fabricated in ultrathin (2-7 nm thick) freestanding hafnium oxide (HfO2) membranes. The high chemical stability of ultrathin HfO2 enables long-lived experiments with <2 nm diameter pores that last several hours, in which we observe >50 000 DNA translocations with no detectable pore expansion. Mean DNA velocities are slower than velocities through comparable silicon nitride pores, providing evidence that HfO2 nanopores have favorable physicochemical interactions with nucleic acids that can be leveraged to slow down DNA in a nanopore.

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Year:  2013        PMID: 24083444      PMCID: PMC4729694          DOI: 10.1021/nn404326f

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  58 in total

1.  Driven polymer translocation through a narrow pore.

Authors:  D K Lubensky; D R Nelson
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

3.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

Authors:  Meni Wanunu; Tali Dadosh; Vishva Ray; Jingmin Jin; Larry McReynolds; Marija Drndić
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

4.  DNA translocation governed by interactions with solid-state nanopores.

Authors:  Meni Wanunu; Jason Sutin; Ben McNally; Andrew Chow; Amit Meller
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

5.  Boron nitride nanopores: highly sensitive DNA single-molecule detectors.

Authors:  Song Liu; Bo Lu; Qing Zhao; Ji Li; Teng Gao; Yubin Chen; Yanfeng Zhang; Zhongfan Liu; Zhongchao Fan; Fuhua Yang; Liping You; Dapeng Yu
Journal:  Adv Mater       Date:  2013-06-17       Impact factor: 30.849

Review 6.  Nanopore analytics: sensing of single molecules.

Authors:  Stefan Howorka; Zuzanna Siwy
Journal:  Chem Soc Rev       Date:  2009-06-15       Impact factor: 54.564

7.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

8.  Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient.

Authors:  Meni Wanunu; Will Morrison; Yitzhak Rabin; Alexander Y Grosberg; Amit Meller
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

Review 9.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  A device for performing lateral conductance measurements on individual double-stranded DNA molecules.

Authors:  Laurent D Menard; Chad E Mair; Michael E Woodson; Jean Pierre Alarie; J Michael Ramsey
Journal:  ACS Nano       Date:  2012-09-17       Impact factor: 15.881

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  46 in total

1.  Salt-Mediated Nanopore Detection of ADAM-17.

Authors:  Xiaohan Chen; Youwen Zhang; Golbarg Mohammadi Roozbahani; Xiyun Guan
Journal:  ACS Appl Bio Mater       Date:  2018-12-24

2.  DNA Translocations through Nanopores under Nanoscale Preconfinement.

Authors:  Kyle Briggs; Gregory Madejski; Martin Magill; Konstantinos Kastritis; Hendrick W de Haan; James L McGrath; Vincent Tabard-Cossa
Journal:  Nano Lett       Date:  2017-12-06       Impact factor: 11.189

Review 3.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

4.  Statistical inference for nanopore sequencing with a biased random walk model.

Authors:  Kevin J Emmett; Jacob K Rosenstein; Jan-Willem van de Meent; Ken L Shepard; Chris H Wiggins
Journal:  Biophys J       Date:  2015-04-21       Impact factor: 4.033

5.  Smooth DNA transport through a narrowed pore geometry.

Authors:  Spencer Carson; James Wilson; Aleksei Aksimentiev; Meni Wanunu
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

6.  Resistive amplitude fingerprints during translocation of linear molecules through charged solid-state nanopores.

Authors:  Sebastian Sensale; Ceming Wang; Hsueh-Chia Chang
Journal:  J Chem Phys       Date:  2020-07-21       Impact factor: 3.488

Review 7.  Nanopore Sensing.

Authors:  Wenqing Shi; Alicia K Friedman; Lane A Baker
Journal:  Anal Chem       Date:  2016-11-18       Impact factor: 6.986

8.  High-bandwidth protein analysis using solid-state nanopores.

Authors:  Joseph Larkin; Robert Y Henley; Murugappan Muthukumar; Jacob K Rosenstein; Meni Wanunu
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

9.  Sequencing with graphene pores.

Authors:  Marija Drndić
Journal:  Nat Nanotechnol       Date:  2014-10       Impact factor: 39.213

10.  Nanopore Fabrication and Application as Biosensors in Neurodegenerative Diseases.

Authors:  Brian Lenhart; Xiaojun Wei; Zehui Zhang; Xiaoqin Wang; Qian Wang; Chang Liu
Journal:  Crit Rev Biomed Eng       Date:  2020
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