Literature DB >> 24143914

A nanopore-nanofiber mesh biosensor to control DNA translocation.

Allison H Squires, Joseph S Hersey, Mark W Grinstaff, Amit Meller.   

Abstract

Solid-state nanopores show promise as single-molecule sensors for biomedical applications, but to increase their resolution and efficiency, analyte molecules must remain longer in the nanopore sensing volume. Here we demonstrate a novel, facile, and customizable nanopore sensor modification that reduces the double-stranded DNA translocation velocity by 2 orders of magnitude or more via interactions outside the nanopore. This is achieved by electrospinning a copolymer nanofiber mesh (NFM) directly onto a solid-state nanopore (NP) chip. The effect of NFMs on dsDNA translocation through an NP is highlighted using a set of NFMs of varying mesh composition that reduce the translocation speed relative to a bare pore from 1- to >100-fold. A representative NFM from this set is effective on DNA as long as 20 kbp, improves the nanopore resolution, and allows discrimination among different DNA lengths.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24143914      PMCID: PMC4039743          DOI: 10.1021/ja408685x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  25 in total

1.  Rapid nanopore discrimination between single polynucleotide molecules.

Authors:  A Meller; L Nivon; E Brandin; J Golovchenko; D Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

2.  Adsorptive membrane chromatography for purification of plasmid DNA.

Authors:  M A Teeters; S E Conrardy; B L Thomas; T W Root; E N Lightfoot
Journal:  J Chromatogr A       Date:  2003-03-07       Impact factor: 4.759

3.  Slowing DNA translocation in a solid-state nanopore.

Authors:  Daniel Fologea; James Uplinger; Brian Thomas; David S McNabb; Jiali Li
Journal:  Nano Lett       Date:  2005-09       Impact factor: 11.189

4.  Noise in solid-state nanopores.

Authors:  R M M Smeets; U F Keyser; N H Dekker; C Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-09       Impact factor: 11.205

5.  DNA translocation governed by interactions with solid-state nanopores.

Authors:  Meni Wanunu; Jason Sutin; Ben McNally; Andrew Chow; Amit Meller
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

6.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

Review 7.  Single molecule sensing with solid-state nanopores: novel materials, methods, and applications.

Authors:  Benjamin N Miles; Aleksandar P Ivanov; Kerry A Wilson; Fatma Doğan; Deanpen Japrung; Joshua B Edel
Journal:  Chem Soc Rev       Date:  2012-09-19       Impact factor: 54.564

8.  pH tuning of DNA translocation time through organically functionalized nanopores.

Authors:  Brett N Anderson; Murugappan Muthukumar; Amit Meller
Journal:  ACS Nano       Date:  2012-12-31       Impact factor: 15.881

9.  Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient.

Authors:  Meni Wanunu; Will Morrison; Yitzhak Rabin; Alexander Y Grosberg; Amit Meller
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

Review 10.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

View more
  17 in total

1.  DNA Translocations through Nanopores under Nanoscale Preconfinement.

Authors:  Kyle Briggs; Gregory Madejski; Martin Magill; Konstantinos Kastritis; Hendrick W de Haan; James L McGrath; Vincent Tabard-Cossa
Journal:  Nano Lett       Date:  2017-12-06       Impact factor: 11.189

Review 2.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

3.  Smooth DNA transport through a narrowed pore geometry.

Authors:  Spencer Carson; James Wilson; Aleksei Aksimentiev; Meni Wanunu
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

4.  Dynamics of a Molecular Plug Docked onto a Solid-State Nanopore.

Authors:  Xin Shi; Qiao Li; Rui Gao; Wei Si; Shao-Chuang Liu; Aleksei Aksimentiev; Yi-Tao Long
Journal:  J Phys Chem Lett       Date:  2018-08-03       Impact factor: 6.475

5.  Cross-Talk Between Ionic and Nanoribbon Current Signals in Graphene Nanoribbon-Nanopore Sensors for Single-Molecule Detection.

Authors:  Matthew Puster; Adrian Balan; Julio A Rodríguez-Manzo; Gopinath Danda; Jae-Hyuk Ahn; William Parkin; Marija Drndić
Journal:  Small       Date:  2015-10-26       Impact factor: 13.281

6.  Functionalized Nanofiber Meshes Enhance Immunosorbent Assays.

Authors:  Joseph S Hersey; Amit Meller; Mark W Grinstaff
Journal:  Anal Chem       Date:  2015-11-18       Impact factor: 6.986

7.  Probing solid-state nanopores with light for the detection of unlabeled analytes.

Authors:  Brett N Anderson; Ossama N Assad; Tal Gilboa; Allison H Squires; Daniel Bar; Amit Meller
Journal:  ACS Nano       Date:  2014-11-05       Impact factor: 15.881

Review 8.  Nanopore-based analysis of biochemical species.

Authors:  Nannan Liu; Zekun Yang; Xiaowen Ou; Benmei Wei; Juntao Zhang; Yongmei Jia; Fan Xia
Journal:  Mikrochim Acta       Date:  2015-07-25       Impact factor: 5.833

9.  Integrated solid-state nanopore platform for nanopore fabrication via dielectric breakdown, DNA-speed deceleration and noise reduction.

Authors:  Yusuke Goto; Itaru Yanagi; Kazuma Matsui; Takahide Yokoi; Ken-Ichi Takeda
Journal:  Sci Rep       Date:  2016-08-08       Impact factor: 4.379

10.  Deceleration of single-stranded DNA passing through a nanopore using a nanometre-sized bead structure.

Authors:  Yusuke Goto; Takanobu Haga; Itaru Yanagi; Takahide Yokoi; Ken-ichi Takeda
Journal:  Sci Rep       Date:  2015-11-12       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.