Literature DB >> 26682804

In-Cell Solid-State NMR: An Emerging Technique for the Study of Biological Membranes.

Xavier L Warnet1, Alexandre A Arnold2, Isabelle Marcotte2, Dror E Warschawski3.   

Abstract

Biological molecular processes are often studied in model systems, which simplifies their inherent complexity but may cause investigators to lose sight of the effects of the molecular environment. Information obtained in this way must therefore be validated by experiments in the cell. NMR has been used to study biological cells since the early days of its development. The first NMR structural studies of a protein inside a cell (by solution-state NMR) and of a membrane protein (by solid-state NMR) were published in 2001 and 2011, respectively. More recently, dynamic nuclear polarization, which has been used to enhance the signal in solid-state NMR, has also been applied to the study of frozen cells. Much progress has been made in the past 5 years, and in this review we take stock of this new technique, which is particularly appropriate for the study of biological membranes.
Copyright © 2015 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26682804      PMCID: PMC4699878          DOI: 10.1016/j.bpj.2015.10.041

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  58 in total

1.  Characterization of membrane proteins in isolated native cellular membranes by dynamic nuclear polarization solid-state NMR spectroscopy without purification and reconstitution.

Authors:  Tomas Jacso; W Trent Franks; Honor Rose; Uwe Fink; Jana Broecker; Sandro Keller; Hartmut Oschkinat; Bernd Reif
Journal:  Angew Chem Int Ed Engl       Date:  2011-11-23       Impact factor: 15.336

2.  In situ 19F NMR studies of an E. coli membrane protein.

Authors:  Pan Shi; Dong Li; Hongwei Chen; Ying Xiong; Yusong Wang; Changlin Tian
Journal:  Protein Sci       Date:  2012-02-23       Impact factor: 6.725

3.  Cellular solid-state nuclear magnetic resonance spectroscopy.

Authors:  Marie Renault; Ria Tommassen-van Boxtel; Martine P Bos; Jan Andries Post; Jan Tommassen; Marc Baldus
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-13       Impact factor: 11.205

Review 4.  Influence of solubilizing environments on membrane protein structures.

Authors:  Timothy A Cross; Mukesh Sharma; Myunggi Yi; Huan-Xiang Zhou
Journal:  Trends Biochem Sci       Date:  2010-08-18       Impact factor: 13.807

5.  Probing the dynamics of intact cells and nuclear envelope precursor membrane vesicles by deuterium solid state NMR spectroscopy.

Authors:  Marie Garnier-Lhomme; Axelle Grélard; Richard D Byrne; Cécile Loudet; Erick J Dufourc; Banafshé Larijani
Journal:  Biochim Biophys Acta       Date:  2007-06-14

6.  On-cell MAS NMR: physiological clues from living cells.

Authors:  Giorgia Zandomeneghi; Karin Ilg; Markus Aebi; Beat H Meier
Journal:  J Am Chem Soc       Date:  2012-10-15       Impact factor: 15.419

Review 7.  Bacterial cell wall composition and the influence of antibiotics by cell-wall and whole-cell NMR.

Authors:  Joseph A H Romaniuk; Lynette Cegelski
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-10-05       Impact factor: 6.237

8.  Sum of the parts: composition and architecture of the bacterial extracellular matrix.

Authors:  Oscar A McCrate; Xiaoxue Zhou; Courtney Reichhardt; Lynette Cegelski
Journal:  J Mol Biol       Date:  2013-07-01       Impact factor: 5.469

9.  REDOR constraints on the peptidoglycan lattice architecture of Staphylococcus aureus and its FemA mutant.

Authors:  Manmilan Singh; Sung Joon Kim; Shasad Sharif; Maria Preobrazhenskaya; Jacob Schaefer
Journal:  Biochim Biophys Acta       Date:  2014-06-02

10.  Nitrogen-15 and carbon-13 dynamic nuclear magnetic resonance study of chain segmental motion of the peptidoglycan pentaglycine chain of 15N-Gly- and 13C2-Gly-labeled Staphylococcus aureus cells and isolated cell walls.

Authors:  A Lapidot; C S Irving
Journal:  Biochemistry       Date:  1979-05-01       Impact factor: 3.162

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  11 in total

Review 1.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

Authors:  Rivkah Rogawski; Ann E McDermott
Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

2.  A New Method of Assessing Lipid Mixtures by 31P Magic-Angle Spinning NMR.

Authors:  Dror E Warschawski; Alexandre A Arnold; Isabelle Marcotte
Journal:  Biophys J       Date:  2018-03-27       Impact factor: 4.033

Review 3.  Hidden motions and motion-induced invisibility: Dynamics-based spectral editing in solid-state NMR.

Authors:  Irina Matlahov; Patrick C A van der Wel
Journal:  Methods       Date:  2018-04-24       Impact factor: 3.608

4.  De novo resonance assignment of the transmembrane domain of LR11/SorLA in E. coli membranes.

Authors:  Xiaoyan Ding; Riqiang Fu; Fang Tian
Journal:  J Magn Reson       Date:  2019-11-01       Impact factor: 2.229

Review 5.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

Authors:  Nader Ghassemi; Alexandre Poulhazan; Fabien Deligey; Frederic Mentink-Vigier; Isabelle Marcotte; Tuo Wang
Journal:  Chem Rev       Date:  2021-12-08       Impact factor: 72.087

Review 6.  Advances in studying protein disorder with solid-state NMR.

Authors:  Ansgar B Siemer
Journal:  Solid State Nucl Magn Reson       Date:  2020-01-12       Impact factor: 2.293

7.  Correlating the Structure and Activity of Y. pestis Ail in a Bacterial Cell Envelope.

Authors:  James E Kent; Lynn M Fujimoto; Kyungsoo Shin; Chandan Singh; Yong Yao; Sang Ho Park; Stanley J Opella; Gregory V Plano; Francesca M Marassi
Journal:  Biophys J       Date:  2020-12-24       Impact factor: 4.033

8.  Photochemically induced dynamic nuclear polarization NMR on photosystem II: donor cofactor observed in entire plant.

Authors:  Geertje J Janssen; Pavlo Bielytskyi; Denis G Artiukhin; Johannes Neugebauer; Huub J M de Groot; Jörg Matysik; A Alia
Journal:  Sci Rep       Date:  2018-12-14       Impact factor: 4.379

9.  New applications of solid-state NMR in structural biology.

Authors:  Patrick C A van der Wel
Journal:  Emerg Top Life Sci       Date:  2018-02-23

Review 10.  Deuterium Solid State NMR Studies of Intact Bacteria Treated With Antimicrobial Peptides.

Authors:  Valerie Booth
Journal:  Front Med Technol       Date:  2021-01-11
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