Literature DB >> 22308526

Phylogeny and beyond: Scientific, historical, and conceptual significance of the first tree of life.

Norman R Pace1, Jan Sapp, Nigel Goldenfeld.   

Abstract

In 1977, Carl Woese and George Fox published a brief paper in PNAS that established, for the first time, that the overall phylogenetic structure of the living world is tripartite. We describe the way in which this monumental discovery was made, its context within the historical development of evolutionary thought, and how it has impacted our understanding of the emergence of life and the characterization of the evolutionary process in its most general form.

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Year:  2012        PMID： 22308526      PMCID： PMC3268332          DOI： 10.1073/pnas.1109716109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  51 in total

Review 1.  Phylogenetic classification and the universal tree.

Authors:  W F Doolittle
Journal:  Science       Date:  1999-06-25       Impact factor: 47.728

Review 2.  A new biology for a new century.

Authors:  Carl R Woese
Journal:  Microbiol Mol Biol Rev       Date:  2004-06       Impact factor: 11.056

Review 3.  The bacterial species challenge: making sense of genetic and ecological diversity.

Authors:  Christophe Fraser; Eric J Alm; Martin F Polz; Brian G Spratt; William P Hanage
Journal:  Science       Date:  2009-02-06       Impact factor: 47.728

4.  Massive horizontal gene transfer in bdelloid rotifers.

Authors:  Eugene A Gladyshev; Matthew Meselson; Irina R Arkhipova
Journal:  Science       Date:  2008-05-30       Impact factor: 47.728

5.  Default taxonomy: Ernst Mayr's view of the microbial world.

Authors:  C R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-15       Impact factor: 11.205

6.  Two empires or three?

Authors:  E Mayr
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-18       Impact factor: 11.205

7.  Phylogenetic structure of the prokaryotic domain: the primary kingdoms.

Authors:  C R Woese; G E Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

8.  Protist classification and the kingdoms of organisms.

Authors:  R H Whittaker; L Margulis
Journal:  Biosystems       Date:  1978-04       Impact factor: 1.973

Review 9.  Construction of phylogenetic trees.

Authors:  W M Fitch; E Margoliash
Journal:  Science       Date:  1967-01-20       Impact factor: 47.728

10.  The phylogeny of prokaryotes.

Authors:  G E Fox; E Stackebrandt; R B Hespell; J Gibson; J Maniloff; T A Dyer; R S Wolfe; W E Balch; R S Tanner; L J Magrum; L B Zablen; R Blakemore; R Gupta; L Bonen; B J Lewis; D A Stahl; K R Luehrsen; K N Chen; C R Woese
Journal:  Science       Date:  1980-07-25       Impact factor: 47.728
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  26 in total

Review 1.  The legacy of Carl Woese and Wolfram Zillig: from phylogeny to landmark discoveries.

Authors:  Sonja-Verena Albers; Patrick Forterre; David Prangishvili; Christa Schleper
Journal:  Nat Rev Microbiol       Date:  2013-10       Impact factor: 60.633

2.  Consensus statement: Virus taxonomy in the age of metagenomics.

Authors:  Peter Simmonds; Mike J Adams; Mária Benkő; Mya Breitbart; J Rodney Brister; Eric B Carstens; Andrew J Davison; Eric Delwart; Alexander E Gorbalenya; Balázs Harrach; Roger Hull; Andrew M Q King; Eugene V Koonin; Mart Krupovic; Jens H Kuhn; Elliot J Lefkowitz; Max L Nibert; Richard Orton; Marilyn J Roossinck; Sead Sabanadzovic; Matthew B Sullivan; Curtis A Suttle; Robert B Tesh; René A van der Vlugt; Arvind Varsani; F Murilo Zerbini
Journal:  Nat Rev Microbiol       Date:  2017-01-03       Impact factor: 60.633

3.  Systems-level antimicrobial drug and drug synergy discovery.

Authors:  Terry Roemer; Charles Boone
Journal:  Nat Chem Biol       Date:  2013-04       Impact factor: 15.040

Review 4.  Animals in a bacterial world, a new imperative for the life sciences.

Authors:  Margaret McFall-Ngai; Michael G Hadfield; Thomas C G Bosch; Hannah V Carey; Tomislav Domazet-Lošo; Angela E Douglas; Nicole Dubilier; Gerard Eberl; Tadashi Fukami; Scott F Gilbert; Ute Hentschel; Nicole King; Staffan Kjelleberg; Andrew H Knoll; Natacha Kremer; Sarkis K Mazmanian; Jessica L Metcalf; Kenneth Nealson; Naomi E Pierce; John F Rawls; Ann Reid; Edward G Ruby; Mary Rumpho; Jon G Sanders; Diethard Tautz; Jennifer J Wernegreen
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-07       Impact factor: 11.205

5.  Classic Spotlight: 16S rRNA Redefines Microbiology.

Authors:  Igor B Zhulin
Journal:  J Bacteriol       Date:  2016-09-22       Impact factor: 3.490

6.  Universal biology and the statistical mechanics of early life.

Authors:  Nigel Goldenfeld; Tommaso Biancalani; Farshid Jafarpour
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-12-28       Impact factor: 4.226

Review 7.  A Comparative Perspective on Ribosome Biogenesis: Unity and Diversity Across the Tree of Life.

Authors:  Michael Jüttner; Sébastien Ferreira-Cerca
Journal:  Methods Mol Biol       Date:  2022

8.  Darwinian behavior in a cold, sporadically fed pool of ribonucleotides.

Authors:  Michael Yarus
Journal:  Astrobiology       Date:  2012-09-04       Impact factor: 4.335

9.  Improving Phylogenies Based on Average Nucleotide Identity, Incorporating Saturation Correction and Nonparametric Bootstrap Support.

Authors:  Sean Gosselin; Matthew S Fullmer; Yutian Feng; Johann Peter Gogarten
Journal:  Syst Biol       Date:  2022-02-10       Impact factor: 15.683

10.  The Origin and Evolution of Baeyer-Villiger Monooxygenases (BVMOs): An Ancestral Family of Flavin Monooxygenases.

Authors:  Maria Laura Mascotti; Walter Jesús Lapadula; Maximiliano Juri Ayub
Journal:  PLoS One       Date:  2015-07-10       Impact factor: 3.240
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