Literature DB >> 29133441

Universal biology and the statistical mechanics of early life.

Nigel Goldenfeld1, Tommaso Biancalani2,3, Farshid Jafarpour2,4.   

Abstract

All known life on the Earth exhibits at least two non-trivial common features: the canonical genetic code and biological homochirality, both of which emerged prior to the Last Universal Common Ancestor state. This article describes recent efforts to provide a narrative of this epoch using tools from statistical mechanics. During the emergence of self-replicating life far from equilibrium in a period of chemical evolution, minimal models of autocatalysis show that homochirality would have necessarily co-evolved along with the efficiency of early-life self-replicators. Dynamical system models of the evolution of the genetic code must explain its universality and its highly refined error-minimization properties. These have both been accounted for in a scenario where life arose from a collective, networked phase where there was no notion of species and perhaps even individuality itself. We show how this phase ultimately terminated during an event sometimes known as the Darwinian transition, leading to the present epoch of tree-like vertical descent of organismal lineages. These examples illustrate concrete examples of universal biology: the quest for a fundamental understanding of the basic properties of living systems, independent of precise instantiation in chemistry or other media.This article is part of the themed issue 'Reconceptualizing the origins of life'.
© 2017 The Author(s).

Keywords:  evolution; genetic code; homochirality; horizontal gene transfer

Mesh:

Year:  2017        PMID: 29133441      PMCID: PMC5686399          DOI: 10.1098/rsta.2016.0341

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  27 in total

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Authors:  Farshid Jafarpour; Tommaso Biancalani; Nigel Goldenfeld
Journal:  Phys Rev E       Date:  2017-03-10       Impact factor: 2.529

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Authors:  Eörs Szathmáry
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-02       Impact factor: 11.205

10.  Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination.

Authors:  Estienne Carl Swart; Valentina Serra; Giulio Petroni; Mariusz Nowacki
Journal:  Cell       Date:  2016-07-14       Impact factor: 41.582

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  7 in total

1.  Probing complexity: thermodynamics and computational mechanics approaches to origins studies.

Authors:  Stuart J Bartlett; Patrick Beckett
Journal:  Interface Focus       Date:  2019-10-18       Impact factor: 3.906

Review 2.  The Life of Behavior.

Authors:  Alex Gomez-Marin; Asif A Ghazanfar
Journal:  Neuron       Date:  2019-10-09       Impact factor: 17.173

3.  The Origin of Life: What Is the Question?

Authors:  Christophe Malaterre; Cyrille Jeancolas; Philippe Nghe
Journal:  Astrobiology       Date:  2022-05-20       Impact factor: 4.045

4.  An evolutionary process without variation and selection.

Authors:  Liane Gabora; Mike Steel
Journal:  J R Soc Interface       Date:  2021-07-28       Impact factor: 4.293

5.  Universal scaling across biochemical networks on Earth.

Authors:  Hyunju Kim; Harrison B Smith; Cole Mathis; Jason Raymond; Sara I Walker
Journal:  Sci Adv       Date:  2019-01-16       Impact factor: 14.136

6.  Horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent.

Authors:  Tom Froese; Jorge I Campos; Kosuke Fujishima; Daisuke Kiga; Nathaniel Virgo
Journal:  Sci Rep       Date:  2018-02-23       Impact factor: 4.379

7.  Genetic codes optimized as a traveling salesman problem.

Authors:  Oliver Attie; Brian Sulkow; Chong Di; Weigang Qiu
Journal:  PLoS One       Date:  2019-10-28       Impact factor: 3.240

  7 in total

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