Literature DB >> 22946838

Darwinian behavior in a cold, sporadically fed pool of ribonucleotides.

Michael Yarus1.   

Abstract

A testable, explicit origin for Darwinian behavior, feasible on a chaotic early Earth, would aid origins discussion. Here I show that a pool receiving unreliable supplies of unstable ribonucleotide precursors can recurrently fill this role. By using numerical integration, the differential equations governing a sporadically fed pool are solved, yielding quantitative constraints for the proliferation of molecules that also have a chemical phenotype. For example, templated triphosphate nucleotide joining is >10(4) too slow, suggesting that a group more reactive than pyrophosphate activated primordial nucleotides. However, measured literature rates are sufficient if the Initial Darwinian Ancestor (IDA) resembles a 5'-5' cofactor-like dinucleotide RNA, synthesized via activation with a phosphorimidazolide-like group. A sporadically fed pool offers unforeseen advantages; for example, the pool hosts a novel replicator which is predominantly unpaired, even though it replicates. Such free template is optimized for effective selection during its replication. Pool nucleotides are also subject to a broadly based selection that impels the population toward replication, effective selection, and Darwinian behavior. Such a primordial pool may have left detectable modern traces. A sporadically fed ribonucleotide pool also fits a recognizable early Earth environment, has recognizable modern descendants, and suits the early shape of the phylogenetic tree of Earthly life. Finally, analysis points to particular data now needed to refine the hypothesis. Accordingly, a kinetically explicit chemical hypothesis for a terran IDA can be justified, and informative experiments seem readily accessible.

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Year:  2012        PMID: 22946838      PMCID: PMC3444769          DOI: 10.1089/ast.2012.0860

Source DB:  PubMed          Journal:  Astrobiology        ISSN: 1557-8070            Impact factor:   4.335


  43 in total

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Authors:  Alexander V Vlassov; Brian H Johnston; Laura F Landweber; Sergei A Kazakov
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5.  Information, probability, and the abundance of the simplest RNA active sites.

Authors:  Ryan Kennedy; Manuel E Lladser; Michael Yarus; Rob Knight
Journal:  Front Biosci       Date:  2008-05-01

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7.  Oxygen-isotope evidence from ancient zircons for liquid water at the Earth's surface 4,300 Myr ago.

Authors:  S J Mojzsis; T M Harrison; R T Pidgeon
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8.  Self-replication of complementary nucleotide-based oligomers.

Authors:  D Sievers; G von Kiedrowski
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9.  Formation of nucleoside 5'-phosphoramidates under potentially prebiological conditions.

Authors:  R Lohrmann
Journal:  J Mol Evol       Date:  1977-11-25       Impact factor: 2.395

10.  Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

Authors:  Matthew W Powner; Béatrice Gerland; John D Sutherland
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  12 in total

1.  Poly(U) RNA-templated synthesis of AppA.

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Journal:  Life (Basel)       Date:  2014-12-16

3.  A necessary condition for coexistence of autocatalytic replicators in a prebiotic environment.

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4.  Cross-backbone templating; ribodinucleotides made on poly(C).

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5.  Non-Watson-Crick RNA synthesis suited to origin functions.

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Journal:  RNA       Date:  2017-10-17       Impact factor: 4.942

6.  Efficient Heritable Gene Expression Readily Evolves in RNA Pools.

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Journal:  J Mol Evol       Date:  2017-07-01       Impact factor: 2.395

7.  Biochemical Refinement Before Genetics: Chance Utility.

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Journal:  J Mol Evol       Date:  2016-09-01       Impact factor: 2.395

8.  Eighty routes to a ribonucleotide world; dispersion and stringency in the decisive selection.

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Journal:  RNA       Date:  2018-05-21       Impact factor: 4.942

9.  A ribonucleotide Origin for Life--fluctuation and near-ideal reactions.

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Journal:  Orig Life Evol Biosph       Date:  2013-01-24       Impact factor: 1.950

10.  A Light-Releasable Potentially Prebiotic Nucleotide Activating Agent.

Authors:  Angelica Mariani; David A Russell; Thomas Javelle; John D Sutherland
Journal:  J Am Chem Soc       Date:  2018-07-03       Impact factor: 15.419

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