Literature DB >> 22267668

Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp.

Jennifer J Mosher1, Tommy J Phelps, Mircea Podar, Richard A Hurt, James H Campbell, Meghan M Drake, James G Moberly, Christopher W Schadt, Steven D Brown, Terry C Hazen, Adam P Arkin, Anthony V Palumbo, Boris A Faybishenko, Dwayne A Elias.   

Abstract

The determination of the success of in situ bioremediation strategies is complex. By using controlled laboratory conditions, the influence of individual variables, such as U(VI), Cr(VI), and electron donors and acceptors on community structure, dynamics, and the metal-reducing potential can be studied. Triplicate anaerobic, continuous-flow reactors were inoculated with Cr(VI)-contaminated groundwater from the Hanford, WA, 100-H area, amended with lactate, and incubated for 95 days to obtain stable, enriched communities. The reactors were kept anaerobic with N(2) gas (9 ml/min) flushing the headspace and were fed a defined medium amended with 30 mM lactate and 0.05 mM sulfate with a 48-h generation time. The resultant diversity decreased from 63 genera within 12 phyla to 11 bacterial genera (from 3 phyla) and 2 archaeal genera (from 1 phylum). Final communities were dominated by Pelosinus spp. and to a lesser degree, Acetobacterium spp., with low levels of other organisms, including methanogens. Four new strains of Pelosinus were isolated, with 3 strains being capable of Cr(VI) reduction while one also reduced U(VI). Under limited sulfate, it appeared that the sulfate reducers, including Desulfovibrio spp., were outcompeted. These results suggest that during times of electron acceptor limitation in situ, organisms such as Pelosinus spp. may outcompete the more-well-studied organisms while maintaining overall metal reduction rates and extents. Finally, lab-scale simulations can test new strategies on a smaller scale while facilitating community member isolation, so that a deeper understanding of community metabolism can be revealed.

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Year:  2012        PMID: 22267668      PMCID: PMC3302606          DOI: 10.1128/AEM.07165-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  51 in total

Review 1.  Cleaning up with genomics: applying molecular biology to bioremediation.

Authors:  Derek R Lovley
Journal:  Nat Rev Microbiol       Date:  2003-10       Impact factor: 60.633

2.  In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen.

Authors:  Wei-Min Wu; Jack Carley; Jian Luo; Matthew A Ginder-Vogel; Erick Cardenas; Mary Beth Leigh; Chiachi Hwang; Shelly D Kelly; Chuanmin Ruan; Liyou Wu; Joy Van Nostrand; Terry Gentry; Kenneth Lowe; Tonia Mehlhorn; Sue Carroll; Wensui Luo; Matthew W Fields; Baohua Gu; David Watson; Kenneth M Kemner; Terence Marsh; James Tiedje; Jizhong Zhou; Scott Fendorf; Peter K Kitanidis; Philip M Jardine; Craig S Criddle
Journal:  Environ Sci Technol       Date:  2007-08-15       Impact factor: 9.028

3.  Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels.

Authors:  Erick Cardenas; Wei-Min Wu; Mary Beth Leigh; Jack Carley; Sue Carroll; Terry Gentry; Jian Luo; David Watson; Baohua Gu; Matthew Ginder-Vogel; Peter K Kitanidis; Philip M Jardine; Jizhong Zhou; Craig S Criddle; Terence L Marsh; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2008-05-02       Impact factor: 4.792

4.  Viability, diversity and composition of the bacterial community in a high Arctic permafrost soil from Spitsbergen, Northern Norway.

Authors:  Aviaja A Hansen; Rodney A Herbert; Karina Mikkelsen; Lars Liengård Jensen; Tommy Kristoffersen; James M Tiedje; Bente Aa Lomstein; Kai W Finster
Journal:  Environ Microbiol       Date:  2007-11       Impact factor: 5.491

5.  Caldicellulosiruptor obsidiansis sp. nov., an anaerobic, extremely thermophilic, cellulolytic bacterium isolated from Obsidian Pool, Yellowstone National Park.

Authors:  Scott D Hamilton-Brehm; Jennifer J Mosher; Tatiana Vishnivetskaya; Mircea Podar; Sue Carroll; Steve Allman; Tommy J Phelps; Martin Keller; James G Elkins
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

6.  Effects of organic carbon supply rates on uranium mobility in a previously bioreduced contaminated sediment.

Authors:  Jiamin Wan; Tetsu K Tokunaga; Yongman Kim; Eoin Brodie; Rebecca Daly; Terry C Hazen; Mary K Firestone
Journal:  Environ Sci Technol       Date:  2008-10-15       Impact factor: 9.028

7.  Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI).

Authors:  Lainie Petrie; Nadia N North; Sherry L Dollhopf; David L Balkwill; Joel E Kostka
Journal:  Appl Environ Microbiol       Date:  2003-12       Impact factor: 4.792

8.  Reduction of hexavalent uranium from organic complexes by sulfate- and iron-reducing bacteria.

Authors:  R Ganesh; K G Robinson; G D Reed; G S Sayler
Journal:  Appl Environ Microbiol       Date:  1997-11       Impact factor: 4.792

Review 9.  Breathing metals as a way of life: geobiology in action.

Authors:  Kenneth H Nealson; Andrea Belz; Brent McKee
Journal:  Antonie Van Leeuwenhoek       Date:  2002-08       Impact factor: 2.271

10.  Competition for L-lactate betweenDesulfovibrio, Veillonella, andAcetobacterium species isolated from anaerobic intertidal sediments.

Authors:  H J Laanbroek; H J Geerligs; A A Peijnenburg; J Siesling
Journal:  Microb Ecol       Date:  1983-12       Impact factor: 4.552

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  11 in total

1.  Rapid transposon liquid enrichment sequencing (TnLE-seq) for gene fitness evaluation in underdeveloped bacterial systems.

Authors:  Samuel R Fels; Grant M Zane; Sean M Blake; Judy D Wall
Journal:  Appl Environ Microbiol       Date:  2013-09-27       Impact factor: 4.792

2.  Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments.

Authors:  Michael P Thorgersen; W Andrew Lancaster; Brian J Vaccaro; Farris L Poole; Andrea M Rocha; Tonia Mehlhorn; Angelica Pettenato; Jayashree Ray; R Jordan Waters; Ryan A Melnyk; Romy Chakraborty; Terry C Hazen; Adam M Deutschbauer; Adam P Arkin; Michael W W Adams
Journal:  Appl Environ Microbiol       Date:  2015-05-15       Impact factor: 4.792

3.  Draft genome sequence of Pelosinus fermentans JBW45, isolated during in situ stimulation for Cr(VI) reduction.

Authors:  Kara Bowen De León; Mary Lynn Young; Laura B Camilleri; Steven D Brown; Jeffrey M Skerker; Adam M Deutschbauer; Adam P Arkin; Matthew W Fields
Journal:  J Bacteriol       Date:  2012-10       Impact factor: 3.490

4.  Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.

Authors:  Steven D Brown; Mircea Podar; Dawn M Klingeman; Courtney M Johnson; Zamin K Yang; Sagar M Utturkar; Miriam L Land; Jennifer J Mosher; Richard A Hurt; Tommy J Phelps; Anthony V Palumbo; Adam P Arkin; Terry C Hazen; Dwayne A Elias
Journal:  J Bacteriol       Date:  2012-09       Impact factor: 3.490

5.  Genomic and physiological characterization of the chromate-reducing, aquifer-derived Firmicute Pelosinus sp. strain HCF1.

Authors:  Harry R Beller; Ruyang Han; Ulas Karaoz; Hsiaochien Lim; Eoin L Brodie
Journal:  Appl Environ Microbiol       Date:  2012-10-12       Impact factor: 4.792

6.  Microbial communities mediating algal detritus turnover under anaerobic conditions.

Authors:  Jessica M Morrison; Chelsea L Murphy; Kristina Baker; Richard M Zamor; Steve J Nikolai; Shawn Wilder; Mostafa S Elshahed; Noha H Youssef
Journal:  PeerJ       Date:  2017-01-10       Impact factor: 2.984

7.  Microbial diversity involved in iron and cryptic sulfur cycling in the ferruginous, low-sulfate waters of Lake Pavin.

Authors:  Jasmine S Berg; Didier Jézéquel; Arnaud Duverger; Dominique Lamy; Christel Laberty-Robert; Jennyfer Miot
Journal:  PLoS One       Date:  2019-02-22       Impact factor: 3.240

8.  Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum.

Authors:  Kara B De León; Sagar M Utturkar; Laura B Camilleri; Dwayne A Elias; Adam P Arkin; Matthew W Fields; Steven D Brown; Judy D Wall
Journal:  Genome Announc       Date:  2015-09-24

9.  Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities.

Authors:  Anil C Somenahally; Jennifer J Mosher; Tong Yuan; Mircea Podar; Tommy J Phelps; Steven D Brown; Zamin K Yang; Terry C Hazen; Adam P Arkin; Anthony V Palumbo; Joy D Van Nostrand; Jizhong Zhou; Dwayne A Elias
Journal:  PLoS One       Date:  2013-12-23       Impact factor: 3.240

10.  Transient O2 pulses direct Fe crystallinity and Fe(III)-reducer gene expression within a soil microbiome.

Authors:  Jared Lee Wilmoth; Mary Ann Moran; Aaron Thompson
Journal:  Microbiome       Date:  2018-10-23       Impact factor: 14.650

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