Literature DB >> 15040178

Cleaning up with genomics: applying molecular biology to bioremediation.

Derek R Lovley1.   

Abstract

Bioremediation has the potential to restore contaminated environments inexpensively yet effectively, but a lack of information about the factors controlling the growth and metabolism of microorganisms in polluted environments often limits its implementation. However, rapid advances in the understanding of bioremediation are on the horizon. Researchers now have the ability to culture microorganisms that are important in bioremediation and can evaluate their physiology using a combination of genome-enabled experimental and modelling techniques. In addition, new environmental genomic techniques offer the possibility for similar studies on as-yet-uncultured organisms. Combining models that can predict the activity of microorganisms that are involved in bioremediation with existing geochemical and hydrological models should transform bioremediation from a largely empirical practice into a science.

Mesh:

Year:  2003        PMID: 15040178     DOI: 10.1038/nrmicro731

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  99 in total

1.  Geobacter sulfurreducens can grow with oxygen as a terminal electron acceptor.

Authors:  W C Lin; M V Coppi; D R Lovley
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

2.  Laboratory evolution of Geobacter sulfurreducens for enhanced growth on lactate via a single-base-pair substitution in a transcriptional regulator.

Authors:  Zarath M Summers; Toshiyuki Ueki; Wael Ismail; Shelley A Haveman; Derek R Lovley
Journal:  ISME J       Date:  2011-11-24       Impact factor: 10.302

3.  Bacterial degradation of benzoate: cross-regulation between aerobic and anaerobic pathways.

Authors:  J Andrés Valderrama; Gonzalo Durante-Rodríguez; Blas Blázquez; José Luis García; Manuel Carmona; Eduardo Díaz
Journal:  J Biol Chem       Date:  2012-02-02       Impact factor: 5.157

4.  Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp.

Authors:  Jennifer J Mosher; Tommy J Phelps; Mircea Podar; Richard A Hurt; James H Campbell; Meghan M Drake; James G Moberly; Christopher W Schadt; Steven D Brown; Terry C Hazen; Adam P Arkin; Anthony V Palumbo; Boris A Faybishenko; Dwayne A Elias
Journal:  Appl Environ Microbiol       Date:  2012-01-20       Impact factor: 4.792

5.  Biochemical characterization of the transcriptional regulator BzdR from Azoarcus sp. CIB.

Authors:  Gonzalo Durante-Rodríguez; J Andrés Valderrama; José Miguel Mancheño; Germán Rivas; Carlos Alfonso; Ernesto Arias-Palomo; Oscar Llorca; José Luis García; Eduardo Díaz; Manuel Carmona
Journal:  J Biol Chem       Date:  2010-09-08       Impact factor: 5.157

6.  Utilization of a calmodulin lysine methyltransferase co-expression system for the generation of a combinatorial library of post-translationally modified proteins.

Authors:  Roberta Magnani; Brian Chaffin; Emerson Dick; Michael L Bricken; Robert L Houtz; Luke H Bradley
Journal:  Protein Expr Purif       Date:  2012-10-02       Impact factor: 1.650

7.  Prokaryotic suppression subtractive hybridization PCR cDNA subtraction, a targeted method to identify differentially expressed genes.

Authors:  Susan K De Long; Kerry A Kinney; Mary Jo Kirisits
Journal:  Appl Environ Microbiol       Date:  2007-11-09       Impact factor: 4.792

8.  In situ expression of nifD in Geobacteraceae in subsurface sediments.

Authors:  Dawn E Holmes; Kelly P Nevin; Derek R Lovley
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

9.  Adaptation to disruption of the electron transfer pathway for Fe(III) reduction in Geobacter sulfurreducens.

Authors:  Ching Leang; L A Adams; K-J Chin; K P Nevin; B A Methé; J Webster; M L Sharma; D R Lovley
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

10.  Growth of thermophilic and hyperthermophilic Fe(III)-reducing microorganisms on a ferruginous smectite as the sole electron acceptor.

Authors:  Kazem Kashefi; Evgenya S Shelobolina; W Crawford Elliott; Derek R Lovley
Journal:  Appl Environ Microbiol       Date:  2007-11-02       Impact factor: 4.792

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