Literature DB >> 22933770

Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.

Steven D Brown1, Mircea Podar, Dawn M Klingeman, Courtney M Johnson, Zamin K Yang, Sagar M Utturkar, Miriam L Land, Jennifer J Mosher, Richard A Hurt, Tommy J Phelps, Anthony V Palumbo, Adam P Arkin, Terry C Hazen, Dwayne A Elias.   

Abstract

Pelosinus fermentans 16S rRNA gene sequences have been reported from diverse geographical sites since the recent isolation of the type strain. We present the genome sequence of the P. fermentans type strain R7 (DSM 17108) and genome sequences for two new strains with different abilities to reduce iron, chromate, and uranium.

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Year:  2012        PMID： 22933770      PMCID： PMC3430306          DOI： 10.1128/JB.01174-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Solexa Ltd.

Authors:  Simon Bennett
Journal:  Pharmacogenomics       Date:  2004-06       Impact factor: 2.533

2.  Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp.

Authors:  Jennifer J Mosher; Tommy J Phelps; Mircea Podar; Richard A Hurt; James H Campbell; Meghan M Drake; James G Moberly; Christopher W Schadt; Steven D Brown; Terry C Hazen; Adam P Arkin; Anthony V Palumbo; Boris A Faybishenko; Dwayne A Elias
Journal:  Appl Environ Microbiol       Date:  2012-01-20       Impact factor: 4.792

3.  Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

Authors:  Steven D Brown; Dawn M Klingeman; Tse-Yuan S Lu; Courtney M Johnson; Sagar M Utturkar; Miriam L Land; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

4.  Mechanism of uranium (VI) removal by two anaerobic bacterial communities.

Authors:  Mónica Martins; Maria Leonor Faleiro; Ana M Rosa da Costa; Sandra Chaves; Rogério Tenreiro; António Pedro Matos; Maria Clara Costa
Journal:  J Hazard Mater       Date:  2010-08-13       Impact factor: 10.588

5.  Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.

Authors:  Evgenya S Shelobolina; Kelly P Nevin; Jessie D Blakeney-Hayward; Claudia V Johnsen; Todd W Plaia; Paul Krader; Trevor Woodard; Dawn E Holmes; Catherine Gaw VanPraagh; Derek R Lovley
Journal:  Int J Syst Evol Microbiol       Date:  2007-01       Impact factor: 2.747

6.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

7.  Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile.

Authors:  Colleen M Hansel; Scott Fendorf; Phillip M Jardine; Christopher A Francis
Journal:  Appl Environ Microbiol       Date:  2008-01-11       Impact factor: 4.792

8.  Microbial links between sulfate reduction and metal retention in uranium- and heavy metal-contaminated soil.

Authors:  Jana Sitte; Denise M Akob; Christian Kaufmann; Kai Finster; Dipanjan Banerjee; Eva-Maria Burkhardt; Joel E Kostka; Andreas C Scheinost; Georg Büchel; Kirsten Küsel
Journal:  Appl Environ Microbiol       Date:  2010-04-02       Impact factor: 4.792

9.  Pelosinus defluvii sp. nov., isolated from chlorinated solvent-contaminated groundwater, emended description of the genus Pelosinus and transfer of Sporotalea propionica to Pelosinus propionicus comb. nov.

Authors:  William M Moe; Rachael E Stebbing; Jyoti U Rao; Kimberly S Bowman; M Fernanda Nobre; Milton S da Costa; Fred A Rainey
Journal:  Int J Syst Evol Microbiol       Date:  2011-08-05       Impact factor: 2.747

10.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169
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  9 in total

1.  A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia.

Authors:  Natalya Yutin; Michael Y Galperin
Journal:  Environ Microbiol       Date:  2013-07-09       Impact factor: 5.491

2.  Genome Diversity of Spore-Forming Firmicutes.

Authors:  Michael Y Galperin
Journal:  Microbiol Spectr       Date:  2013-12

3.  Bioinformatic analysis of beta carbonic anhydrase sequences from protozoans and metazoans.

Authors:  Reza Zolfaghari Emameh; Harlan Barker; Martti E E Tolvanen; Csaba Ortutay; Seppo Parkkila
Journal:  Parasit Vectors       Date:  2014-01-21       Impact factor: 3.876

4.  Sustainable growth of Dehalococcoides mccartyi 195 by corrinoid salvaging and remodeling in defined lactate-fermenting consortia.

Authors:  Yujie Men; Erica C Seth; Shan Yi; Robert H Allen; Michiko E Taga; Lisa Alvarez-Cohen
Journal:  Appl Environ Microbiol       Date:  2014-01-24       Impact factor: 4.792

5.  Complete Genome Sequence of Pelosinus sp. Strain UFO1 Assembled Using Single-Molecule Real-Time DNA Sequencing Technology.

Authors:  Steven D Brown; Sagar M Utturkar; Timothy S Magnuson; Allison E Ray; Farris L Poole; W Andrew Lancaster; Michael P Thorgersen; Michael W W Adams; Dwayne A Elias
Journal:  Genome Announc       Date:  2014-09-04

6.  Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum.

Authors:  Kara B De León; Sagar M Utturkar; Laura B Camilleri; Dwayne A Elias; Adam P Arkin; Matthew W Fields; Steven D Brown; Judy D Wall
Journal:  Genome Announc       Date:  2015-09-24

7.  Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia.

Authors:  Steven D Brown; Shilpa Nagaraju; Sagar Utturkar; Sashini De Tissera; Simón Segovia; Wayne Mitchell; Miriam L Land; Asela Dassanayake; Michael Köpke
Journal:  Biotechnol Biofuels       Date:  2014-03-21       Impact factor: 6.040

8.  Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

Authors:  Sagar M Utturkar; Edward A Bayer; Ilya Borovok; Raphael Lamed; Richard A Hurt; Miriam L Land; Dawn M Klingeman; Dwayne Elias; Jizhong Zhou; Marcel Huntemann; Alicia Clum; Manoj Pillay; Krishnaveni Palaniappan; Neha Varghese; Natalia Mikhailova; Dimitrios Stamatis; T B K Reddy; Chew Yee Ngan; Chris Daum; Nicole Shapiro; Victor Markowitz; Natalia Ivanova; Nikos Kyrpides; Tanja Woyke; Steven D Brown
Journal:  Genome Announc       Date:  2016-09-29

9.  Transient O2 pulses direct Fe crystallinity and Fe(III)-reducer gene expression within a soil microbiome.

Authors:  Jared Lee Wilmoth; Mary Ann Moran; Aaron Thompson
Journal:  Microbiome       Date:  2018-10-23       Impact factor: 14.650
  9 in total

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