Literature DB >> 22965085

Draft genome sequence of Pelosinus fermentans JBW45, isolated during in situ stimulation for Cr(VI) reduction.

Kara Bowen De León1, Mary Lynn Young, Laura B Camilleri, Steven D Brown, Jeffrey M Skerker, Adam M Deutschbauer, Adam P Arkin, Matthew W Fields.   

Abstract

Pelosinus fermentans JBW45 is an anaerobic, lactate-fermenting bacterium isolated from Cr(VI)-contaminated groundwater at the Hanford Nuclear Reservation 100-H site (Washington) that was collected after stimulation with a polylactate compound. The genome sequence of this organism will provide insight into the metabolic potential of a predominant population during stimulation for metal-reducing conditions.

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Year:  2012        PMID： 22965085      PMCID： PMC3457247          DOI： 10.1128/JB.01224-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Solexa Ltd.

Authors:  Simon Bennett
Journal:  Pharmacogenomics       Date:  2004-06       Impact factor: 2.533

2.  Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp.

Authors:  Jennifer J Mosher; Tommy J Phelps; Mircea Podar; Richard A Hurt; James H Campbell; Meghan M Drake; James G Moberly; Christopher W Schadt; Steven D Brown; Terry C Hazen; Adam P Arkin; Anthony V Palumbo; Boris A Faybishenko; Dwayne A Elias
Journal:  Appl Environ Microbiol       Date:  2012-01-20       Impact factor: 4.792

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  Geophysical monitoring of hydrological and biogeochemical transformations associated with Cr(VI) bioremediation.

Authors:  Susan S Hubbard; Ken Williams; Mark E Conrad; Boris Faybishenko; John Peterson; Jinsong Chen; Phil Long; Terry Hazent
Journal:  Environ Sci Technol       Date:  2008-05-15       Impact factor: 9.028

5.  Overcoming the anaerobic hurdle in phenotypic microarrays: generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough.

Authors:  Sharon Borglin; Dominique Joyner; Janet Jacobsen; Aindrila Mukhopadhyay; Terry C Hazen
Journal:  J Microbiol Methods       Date:  2008-10-22       Impact factor: 2.363

6.  Pelosinus defluvii sp. nov., isolated from chlorinated solvent-contaminated groundwater, emended description of the genus Pelosinus and transfer of Sporotalea propionica to Pelosinus propionicus comb. nov.

Authors:  William M Moe; Rachael E Stebbing; Jyoti U Rao; Kimberly S Bowman; M Fernanda Nobre; Milton S da Costa; Fred A Rainey
Journal:  Int J Syst Evol Microbiol       Date:  2011-08-05       Impact factor: 2.747

7.  Intragenomic heterogeneity of the 16S rRNA gene in strain UFO1 caused by a 100-bp insertion in helix 6.

Authors:  Allison E Ray; Stephanie A Connon; Peter P Sheridan; Jeremy Gilbreath; Malcolm Shields; Deborah T Newby; Yoshiko Fujita; Timothy S Magnuson
Journal:  FEMS Microbiol Ecol       Date:  2010-06       Impact factor: 4.194

8.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

9.  In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound.

Authors:  Boris Faybishenko; Terry C Hazen; Philip E Long; Eoin L Brodie; Mark E Conrad; Susan S Hubbard; John N Christensen; Dominique Joyner; Sharon E Borglin; Romy Chakraborty; Kenneth H Williams; John E Peterson; Jinsong Chen; Shaun T Brown; Tetsu K Tokunaga; Jiamin Wan; Mary Firestone; Darrell R Newcomer; Charles T Resch; Kirk J Cantrell; Anna Willett; Stephen Koenigsberg
Journal:  Environ Sci Technol       Date:  2008-11-15       Impact factor: 9.028
  9 in total
  6 in total

1.  A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia.

Authors:  Natalya Yutin; Michael Y Galperin
Journal:  Environ Microbiol       Date:  2013-07-09       Impact factor: 5.491

2.  Genome Diversity of Spore-Forming Firmicutes.

Authors:  Michael Y Galperin
Journal:  Microbiol Spectr       Date:  2013-12

3.  Complete Genome Sequence of Pelosinus sp. Strain UFO1 Assembled Using Single-Molecule Real-Time DNA Sequencing Technology.

Authors:  Steven D Brown; Sagar M Utturkar; Timothy S Magnuson; Allison E Ray; Farris L Poole; W Andrew Lancaster; Michael P Thorgersen; Michael W W Adams; Dwayne A Elias
Journal:  Genome Announc       Date:  2014-09-04

4.  Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by Desulfovibrio vulgaris Hildenborough.

Authors:  Kara B De León; Grant M Zane; Valentine V Trotter; Gregory P Krantz; Adam P Arkin; Gareth P Butland; Peter J Walian; Matthew W Fields; Judy D Wall
Journal:  MBio       Date:  2017-10-17       Impact factor: 7.867

5.  On Modeling Ensemble Transport of Metal Reducing Motile Bacteria.

Authors:  Xueke Yang; Rishi Parashar; Nicole L Sund; Andrew E Plymale; Timothy D Scheibe; Dehong Hu; Ryan T Kelly
Journal:  Sci Rep       Date:  2019-10-10       Impact factor: 4.379

6.  Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum.

Authors:  Kara B De León; Sagar M Utturkar; Laura B Camilleri; Dwayne A Elias; Adam P Arkin; Matthew W Fields; Steven D Brown; Judy D Wall
Journal:  Genome Announc       Date:  2015-09-24
  6 in total

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