Literature DB >> 25979890

Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments.

Michael P Thorgersen1, W Andrew Lancaster1, Brian J Vaccaro1, Farris L Poole1, Andrea M Rocha2, Tonia Mehlhorn2, Angelica Pettenato3, Jayashree Ray3, R Jordan Waters3, Ryan A Melnyk3, Romy Chakraborty3, Terry C Hazen2, Adam M Deutschbauer3, Adam P Arkin3, Michael W W Adams4.   

Abstract

The concentrations of molybdenum (Mo) and 25 other metals were measured in groundwater samples from 80 wells on the Oak Ridge Reservation (ORR) (Oak Ridge, TN), many of which are contaminated with nitrate, as well as uranium and various other metals. The concentrations of nitrate and uranium were in the ranges of 0.1 μM to 230 mM and <0.2 nM to 580 μM, respectively. Almost all metals examined had significantly greater median concentrations in a subset of wells that were highly contaminated with uranium (≥126 nM). They included cadmium, manganese, and cobalt, which were 1,300- to 2,700-fold higher. A notable exception, however, was Mo, which had a lower median concentration in the uranium-contaminated wells. This is significant, because Mo is essential in the dissimilatory nitrate reduction branch of the global nitrogen cycle. It is required at the catalytic site of nitrate reductase, the enzyme that reduces nitrate to nitrite. Moreover, more than 85% of the groundwater samples contained less than 10 nM Mo, whereas concentrations of 10 to 100 nM Mo were required for efficient growth by nitrate reduction for two Pseudomonas strains isolated from ORR wells and by a model denitrifier, Pseudomonas stutzeri RCH2. Higher concentrations of Mo tended to inhibit the growth of these strains due to the accumulation of toxic concentrations of nitrite, and this effect was exacerbated at high nitrate concentrations. The relevance of these results to a Mo-based nitrate removal strategy and the potential community-driving role that Mo plays in contaminated environments are discussed.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 25979890      PMCID: PMC4495186          DOI: 10.1128/AEM.00917-15

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  25 in total

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Journal:  Ground Water       Date:  2005 Mar-Apr       Impact factor: 2.671

2.  Growth yields in bacterial denitrification and nitrate ammonification.

Authors:  Tobin O Strohm; Ben Griffin; Walter G Zumft; Bernhard Schink
Journal:  Appl Environ Microbiol       Date:  2007-01-05       Impact factor: 4.792

Review 3.  Tungsten, the surprisingly positively acting heavy metal element for prokaryotes.

Authors:  Jan R Andreesen; Kathrin Makdessi
Journal:  Ann N Y Acad Sci       Date:  2007-12-20       Impact factor: 5.691

4.  Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile.

Authors:  Colleen M Hansel; Scott Fendorf; Phillip M Jardine; Christopher A Francis
Journal:  Appl Environ Microbiol       Date:  2008-01-11       Impact factor: 4.792

5.  Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels.

Authors:  Erick Cardenas; Wei-Min Wu; Mary Beth Leigh; Jack Carley; Sue Carroll; Terry Gentry; Jian Luo; David Watson; Baohua Gu; Matthew Ginder-Vogel; Peter K Kitanidis; Philip M Jardine; Jizhong Zhou; Craig S Criddle; Terence L Marsh; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2008-05-02       Impact factor: 4.792

Review 6.  Cell biology and molecular basis of denitrification.

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Journal:  Microbiol Mol Biol Rev       Date:  1997-12       Impact factor: 11.056

7.  Microbial metalloproteomes are largely uncharacterized.

Authors:  Aleksandar Cvetkovic; Angeli Lal Menon; Michael P Thorgersen; Joseph W Scott; Farris L Poole; Francis E Jenney; W Andrew Lancaster; Jeremy L Praissman; Saratchandra Shanmukh; Brian J Vaccaro; Sunia A Trauger; Ewa Kalisiak; Junefredo V Apon; Gary Siuzdak; Steven M Yannone; John A Tainer; Michael W W Adams
Journal:  Nature       Date:  2010-07-18       Impact factor: 49.962

8.  Impact of biostimulated redox processes on metal dynamics in an iron-rich creek soil of a former uranium mining area.

Authors:  Eva-Maria Burkhardt; Denise M Akob; Sebastian Bischoff; Jana Sitte; Joel E Kostka; Dipanjan Banerjee; Andreas C Scheinost; Kirsten Küsel
Journal:  Environ Sci Technol       Date:  2010-01-01       Impact factor: 9.028

9.  Expression of denitrification enzymes in response to the dissolved oxygen level and respiratory substrate in continuous culture of Pseudomonas stutzeri.

Authors:  H Körner; W G Zumft
Journal:  Appl Environ Microbiol       Date:  1989-07       Impact factor: 4.792

10.  Functional gene array-based analysis of microbial community structure in groundwaters with a gradient of contaminant levels.

Authors:  Patricia J Waldron; Liyou Wu; Joy D Van Nostrand; Chris W Schadt; Zhili He; David B Watson; Philip M Jardine; Anthony V Palumbo; Terry C Hazen; Jizhong Zhou
Journal:  Environ Sci Technol       Date:  2009-05-15       Impact factor: 9.028

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  13 in total

1.  Mutant phenotypes for thousands of bacterial genes of unknown function.

Authors:  Morgan N Price; Kelly M Wetmore; R Jordan Waters; Mark Callaghan; Jayashree Ray; Hualan Liu; Jennifer V Kuehl; Ryan A Melnyk; Jacob S Lamson; Yumi Suh; Hans K Carlson; Zuelma Esquivel; Harini Sadeeshkumar; Romy Chakraborty; Grant M Zane; Benjamin E Rubin; Judy D Wall; Axel Visel; James Bristow; Matthew J Blow; Adam P Arkin; Adam M Deutschbauer
Journal:  Nature       Date:  2018-05-16       Impact factor: 49.962

2.  Convergent gain and loss of genomic islands drive lifestyle changes in plant-associated Pseudomonas.

Authors:  Ryan A Melnyk; Sarzana S Hossain; Cara H Haney
Journal:  ISME J       Date:  2019-02-20       Impact factor: 10.302

3.  Nitrate-Utilizing Microorganisms Resistant to Multiple Metals from the Heavily Contaminated Oak Ridge Reservation.

Authors:  Michael P Thorgersen; Xiaoxuan Ge; Farris L Poole; Morgan N Price; Adam P Arkin; Michael W W Adams
Journal:  Appl Environ Microbiol       Date:  2019-08-14       Impact factor: 4.792

4.  Deciphering Microbial Metal Toxicity Responses via Random Bar Code Transposon Site Sequencing and Activity-Based Metabolomics.

Authors:  Michael P Thorgersen; Jingchuan Xue; Erica L W Majumder; Valentine V Trotter; Xiaoxuan Ge; Farris L Poole; Trenton K Owens; Lauren M Lui; Torben N Nielsen; Adam P Arkin; Adam M Deutschbauer; Gary Siuzdak; Michael W W Adams
Journal:  Appl Environ Microbiol       Date:  2021-08-25       Impact factor: 4.792

5.  Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses.

Authors:  Brian J Vaccaro; Michael P Thorgersen; W Andrew Lancaster; Morgan N Price; Kelly M Wetmore; Farris L Poole; Adam Deutschbauer; Adam P Arkin; Michael W W Adams
Journal:  Appl Environ Microbiol       Date:  2015-10-09       Impact factor: 4.792

6.  Global Isotope Metabolomics Reveals Adaptive Strategies for Nitrogen Assimilation.

Authors:  Michael E Kurczy; Erica M Forsberg; Michael P Thorgersen; Farris L Poole; H Paul Benton; Julijana Ivanisevic; Minerva L Tran; Judy D Wall; Dwayne A Elias; Michael W W Adams; Gary Siuzdak
Journal:  ACS Chem Biol       Date:  2016-04-08       Impact factor: 5.100

7.  Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins.

Authors:  Sean Carim; Ashley L Azadeh; Alexey E Kazakov; Morgan N Price; Peter J Walian; Lauren M Lui; Torben N Nielsen; Romy Chakraborty; Adam M Deutschbauer; Vivek K Mutalik; Adam P Arkin
Journal:  ISME J       Date:  2021-03-01       Impact factor: 11.217

8.  Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites.

Authors:  Stefan Jenkins; Tami L Swenson; Rebecca Lau; Andrea M Rocha; Alex Aaring; Terry C Hazen; Romy Chakraborty; Trent R Northen
Journal:  Front Microbiol       Date:  2017-12-22       Impact factor: 5.640

9.  Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.

Authors:  Zhili He; Ping Zhang; Linwei Wu; Andrea M Rocha; Qichao Tu; Zhou Shi; Bo Wu; Yujia Qin; Jianjun Wang; Qingyun Yan; Daniel Curtis; Daliang Ning; Joy D Van Nostrand; Liyou Wu; Yunfeng Yang; Dwayne A Elias; David B Watson; Michael W W Adams; Matthew W Fields; Eric J Alm; Terry C Hazen; Paul D Adams; Adam P Arkin; Jizhong Zhou
Journal:  MBio       Date:  2018-02-20       Impact factor: 7.867

10.  Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater.

Authors:  William B Ludington; Thaddeus D Seher; Olin Applegate; Xunde Li; Joseph I Kliegman; Charles Langelier; Edward R Atwill; Thomas Harter; Joseph L DeRisi
Journal:  PLoS One       Date:  2017-04-06       Impact factor: 3.240

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