Literature DB >> 22219964

4-Aza-1-azoniabicyclo-[2.2.2]octa-ne-2-amino-benzoate-2-amino-benzoic acid (1/1/1).

Hadi D Arman, Trupta Kaulgud, Edward R T Tiekink.   

Abstract

A 4-aza-1-azoniabicyclo-[2.2.2]octane cation, a 2-amino-benzoate anion and a neutral 2-amino-benzoic acid mol-ecule comprise the asymmetric unit of the title compound, C(6)H(13)N(2) (+)·C(7)H(6)NO(2) (-)·C(7)H(7)NO(2). An intra-molecular N-H⋯O hydrogen bond occurs in the anion and in the neutral 2-amino-benzoic acid mol-ecule. The cation provides a charge-assisted N-H⋯O hydrogen bond to the anion, and the 2-amino-benzoic acid mol-ecule forms an O-H⋯N hydrogen bond to the unprotonated amino N atom in the cation. In this way, a three-component aggregate is formed. These are connected into a three-dimensional network by amino-carboxyl-ate N-H⋯O hydrogen bonds. N-H⋯N hydrogen bonds are also observed.

Entities:  

Year:  2011        PMID: 22219964      PMCID: PMC3247346          DOI: 10.1107/S1600536811041559

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related studies on co-crystal formation, see: Arman et al. (2010 ▶); Arman & Tiekink (2010 ▶); Wardell & Tiekink (2011 ▶). For examples of multi-component crystals containing the 2-amino­benzoate anion, see: Lynch et al. (1998 ▶); Chen & Peng (2011 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C6H13N2C7H6NO2 −·C7H7NO2 M = 386.45 Monoclinic, a = 9.285 (3) Å b = 16.843 (5) Å c = 12.660 (4) Å β = 102.127 (6)° V = 1935.7 (10) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 98 K 0.34 × 0.17 × 0.07 mm

Data collection

Rigaku AFC12/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.731, T max = 1.000 16911 measured reflections 4440 independent reflections 3929 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.128 S = 1.13 4440 reflections 268 parameters 7 restraints H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811041559/hb6440sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041559/hb6440Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811041559/hb6440Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H13N2+·C7H6NO2·C7H7NO2F(000) = 824
Mr = 386.45Dx = 1.326 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8162 reflections
a = 9.285 (3) Åθ = 2.0–40.6°
b = 16.843 (5) ŵ = 0.09 mm1
c = 12.660 (4) ÅT = 98 K
β = 102.127 (6)°Block, colourless
V = 1935.7 (10) Å30.34 × 0.17 × 0.07 mm
Z = 4
Rigaku AFC12K/SATURN724 diffractometer4440 independent reflections
Radiation source: fine-focus sealed tube3929 reflections with I > 2σ(I)
graphiteRint = 0.054
ω scansθmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −12→12
Tmin = 0.731, Tmax = 1.000k = −19→21
16911 measured reflectionsl = −15→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.0473P)2 + 0.9109P] where P = (Fo2 + 2Fc2)/3
4440 reflections(Δ/σ)max < 0.001
268 parametersΔρmax = 0.30 e Å3
7 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.73506 (15)0.46965 (8)1.01396 (10)0.0286 (3)
H1o0.74330.47520.94950.043*
O20.63182 (15)0.35565 (8)0.94734 (10)0.0280 (3)
O30.87552 (13)0.60731 (8)0.46906 (9)0.0255 (3)
O40.63909 (13)0.62403 (7)0.38987 (10)0.0245 (3)
N10.58477 (16)0.24385 (8)1.09196 (12)0.0225 (3)
H1n0.52620.20751.11000.034*
H2n0.57100.25961.02430.034*
N21.07213 (17)0.69313 (11)0.38788 (13)0.0320 (4)
H3n1.05470.66970.44600.048*
H4n1.16310.70600.38500.048*
N30.76627 (15)0.50739 (8)0.82113 (11)0.0203 (3)
N40.79912 (15)0.55587 (8)0.63832 (11)0.0207 (3)
H5n0.81140.57350.57120.025*
C10.61784 (17)0.30546 (9)1.16546 (13)0.0184 (3)
C20.66288 (17)0.38151 (9)1.13704 (12)0.0175 (3)
C30.69563 (17)0.44053 (10)1.21593 (13)0.0200 (3)
H30.72290.49181.19590.024*
C40.68936 (19)0.42613 (11)1.32282 (13)0.0232 (3)
H40.71100.46711.37540.028*
C50.65063 (18)0.35033 (10)1.35151 (13)0.0228 (3)
H50.64930.33921.42490.027*
C60.61417 (17)0.29115 (10)1.27466 (13)0.0209 (3)
H60.58630.24021.29570.025*
C70.67418 (17)0.40032 (10)1.02372 (13)0.0192 (3)
C80.96688 (18)0.68766 (10)0.29348 (13)0.0211 (3)
C90.82171 (17)0.66015 (9)0.29093 (13)0.0185 (3)
C100.72053 (18)0.65777 (10)0.19229 (13)0.0211 (3)
H100.62270.64070.19120.025*
C110.7582 (2)0.67941 (10)0.09614 (14)0.0253 (4)
H110.68830.67590.02980.030*
C120.9008 (2)0.70645 (10)0.09858 (14)0.0259 (4)
H120.92830.72150.03330.031*
C131.00247 (19)0.71146 (10)0.19520 (14)0.0243 (4)
H131.09830.73130.19550.029*
C140.77248 (18)0.62962 (9)0.38957 (13)0.0190 (3)
C150.92485 (19)0.50551 (11)0.81698 (14)0.0254 (4)
H15A0.96410.45120.83320.031*
H15B0.98060.54200.87210.031*
C160.94441 (19)0.53077 (12)0.70394 (15)0.0289 (4)
H16A1.01540.57530.71030.035*
H16B0.98370.48580.66820.035*
C170.71221 (19)0.58987 (10)0.80251 (14)0.0241 (4)
H17A0.76390.62420.86200.029*
H17B0.60550.59160.80220.029*
C180.7387 (2)0.62134 (10)0.69428 (14)0.0262 (4)
H18A0.64500.64060.64910.031*
H18B0.80910.66620.70700.031*
C190.6829 (2)0.45573 (11)0.73500 (13)0.0255 (4)
H19A0.57800.45410.74030.031*
H19B0.72240.40100.74430.031*
C200.6952 (2)0.48755 (11)0.62315 (14)0.0294 (4)
H20A0.73180.44520.58130.035*
H20B0.59720.50480.58260.035*
U11U22U33U12U13U23
O10.0416 (7)0.0283 (7)0.0170 (6)−0.0134 (5)0.0084 (5)0.0005 (5)
O20.0388 (7)0.0268 (7)0.0190 (6)−0.0089 (5)0.0072 (5)−0.0038 (5)
O30.0244 (6)0.0334 (7)0.0195 (6)−0.0001 (5)0.0065 (5)0.0052 (5)
O40.0217 (6)0.0242 (6)0.0305 (7)0.0010 (5)0.0116 (5)0.0023 (5)
N10.0269 (7)0.0176 (7)0.0247 (7)−0.0022 (5)0.0093 (6)−0.0011 (6)
N20.0226 (7)0.0477 (10)0.0253 (8)−0.0078 (7)0.0038 (6)0.0046 (7)
N30.0226 (7)0.0212 (7)0.0176 (6)−0.0018 (5)0.0052 (5)0.0014 (5)
N40.0224 (7)0.0229 (7)0.0181 (6)0.0010 (5)0.0072 (5)0.0027 (5)
C10.0162 (7)0.0179 (8)0.0214 (8)0.0017 (6)0.0048 (6)0.0006 (6)
C20.0168 (7)0.0196 (8)0.0164 (7)0.0012 (6)0.0044 (6)0.0009 (6)
C30.0210 (7)0.0192 (8)0.0203 (8)−0.0014 (6)0.0057 (6)0.0006 (6)
C40.0265 (8)0.0257 (9)0.0179 (8)−0.0038 (6)0.0055 (6)−0.0018 (7)
C50.0230 (8)0.0286 (9)0.0173 (8)0.0001 (6)0.0051 (6)0.0046 (7)
C60.0213 (8)0.0185 (8)0.0236 (8)0.0013 (6)0.0067 (7)0.0049 (6)
C70.0195 (7)0.0191 (8)0.0193 (8)0.0001 (6)0.0046 (6)0.0001 (6)
C80.0225 (8)0.0192 (8)0.0226 (8)0.0023 (6)0.0069 (6)0.0009 (6)
C90.0220 (8)0.0151 (7)0.0199 (8)0.0015 (6)0.0074 (6)0.0004 (6)
C100.0233 (8)0.0164 (8)0.0237 (8)0.0013 (6)0.0053 (6)−0.0014 (6)
C110.0321 (9)0.0232 (9)0.0199 (8)0.0047 (7)0.0040 (7)0.0001 (7)
C120.0362 (9)0.0215 (8)0.0229 (8)0.0053 (7)0.0127 (7)0.0044 (7)
C130.0254 (8)0.0220 (8)0.0283 (9)0.0011 (6)0.0117 (7)0.0035 (7)
C140.0226 (8)0.0150 (7)0.0206 (8)0.0006 (6)0.0073 (6)−0.0009 (6)
C150.0221 (8)0.0312 (9)0.0215 (8)0.0024 (7)0.0011 (7)0.0047 (7)
C160.0202 (8)0.0394 (11)0.0284 (9)0.0058 (7)0.0084 (7)0.0089 (8)
C170.0294 (9)0.0230 (8)0.0222 (8)0.0026 (7)0.0106 (7)0.0007 (7)
C180.0319 (9)0.0216 (8)0.0288 (9)0.0050 (7)0.0146 (8)0.0047 (7)
C190.0305 (9)0.0251 (9)0.0203 (8)−0.0082 (7)0.0036 (7)−0.0004 (7)
C200.0396 (10)0.0300 (10)0.0173 (8)−0.0114 (8)0.0028 (7)−0.0022 (7)
O1—C71.315 (2)C6—H60.9500
O1—H1O0.8402C8—C131.411 (2)
O2—C71.223 (2)C8—C91.419 (2)
O3—C141.290 (2)C9—C101.397 (2)
O4—C141.243 (2)C9—C141.507 (2)
N1—C11.384 (2)C10—C111.384 (2)
N1—H1N0.8800C10—H100.9500
N1—H2N0.8802C11—C121.394 (3)
N2—C81.379 (2)C11—H110.9500
N2—H3N0.8800C12—C131.382 (3)
N2—H4N0.8799C12—H120.9500
N3—C171.479 (2)C13—H130.9500
N3—C191.480 (2)C15—C161.540 (2)
N3—C151.485 (2)C15—H15A0.9900
N4—C181.483 (2)C15—H15B0.9900
N4—C201.488 (2)C16—H16A0.9900
N4—C161.489 (2)C16—H16B0.9900
N4—H5N0.9300C17—C181.536 (2)
C1—C61.411 (2)C17—H17A0.9900
C1—C21.417 (2)C17—H17B0.9900
C2—C31.397 (2)C18—H18A0.9900
C2—C71.494 (2)C18—H18B0.9900
C3—C41.388 (2)C19—C201.541 (2)
C3—H30.9500C19—H19A0.9900
C4—C51.395 (2)C19—H19B0.9900
C4—H40.9500C20—H20A0.9900
C5—C61.384 (2)C20—H20B0.9900
C5—H50.9500
C7—O1—H1O108.5C10—C11—H11120.6
C1—N1—H1N114.1C12—C11—H11120.6
C1—N1—H2N113.2C13—C12—C11120.57 (16)
H1N—N1—H2N119.4C13—C12—H12119.7
C8—N2—H3N118.3C11—C12—H12119.7
C8—N2—H4N119.5C12—C13—C8121.35 (16)
H3N—N2—H4N119.5C12—C13—H13119.3
C17—N3—C19109.10 (14)C8—C13—H13119.3
C17—N3—C15108.67 (13)O4—C14—O3123.47 (15)
C19—N3—C15109.31 (14)O4—C14—C9120.27 (15)
C18—N4—C20109.67 (14)O3—C14—C9116.19 (14)
C18—N4—C16109.51 (14)N3—C15—C16109.79 (13)
C20—N4—C16109.83 (14)N3—C15—H15A109.7
C18—N4—H5N109.3C16—C15—H15A109.7
C20—N4—H5N109.3N3—C15—H15B109.7
C16—N4—H5N109.3C16—C15—H15B109.7
N1—C1—C6118.89 (15)H15A—C15—H15B108.2
N1—C1—C2122.85 (14)N4—C16—C15109.08 (13)
C6—C1—C2118.18 (15)N4—C16—H16A109.9
C3—C2—C1119.56 (14)C15—C16—H16A109.9
C3—C2—C7119.14 (14)N4—C16—H16B109.9
C1—C2—C7121.29 (14)C15—C16—H16B109.9
C4—C3—C2121.70 (15)H16A—C16—H16B108.3
C4—C3—H3119.2N3—C17—C18110.71 (13)
C2—C3—H3119.2N3—C17—H17A109.5
C3—C4—C5118.66 (16)C18—C17—H17A109.5
C3—C4—H4120.7N3—C17—H17B109.5
C5—C4—H4120.7C18—C17—H17B109.5
C6—C5—C4120.95 (15)H17A—C17—H17B108.1
C6—C5—H5119.5N4—C18—C17108.48 (13)
C4—C5—H5119.5N4—C18—H18A110.0
C5—C6—C1120.87 (15)C17—C18—H18A110.0
C5—C6—H6119.6N4—C18—H18B110.0
C1—C6—H6119.6C17—C18—H18B110.0
O2—C7—O1123.04 (15)H18A—C18—H18B108.4
O2—C7—C2123.56 (15)N3—C19—C20110.12 (14)
O1—C7—C2113.39 (14)N3—C19—H19A109.6
N2—C8—C13119.39 (16)C20—C19—H19A109.6
N2—C8—C9122.57 (15)N3—C19—H19B109.6
C13—C8—C9118.03 (15)C20—C19—H19B109.6
C10—C9—C8119.14 (15)H19A—C19—H19B108.2
C10—C9—C14117.83 (15)N4—C20—C19108.78 (14)
C8—C9—C14122.98 (15)N4—C20—H20A109.9
C11—C10—C9122.13 (16)C19—C20—H20A109.9
C11—C10—H10118.9N4—C20—H20B109.9
C9—C10—H10118.9C19—C20—H20B109.9
C10—C11—C12118.74 (16)H20A—C20—H20B108.3
N1—C1—C2—C3−179.44 (14)C11—C12—C13—C81.6 (3)
C6—C1—C2—C3−2.8 (2)N2—C8—C13—C12179.51 (17)
N1—C1—C2—C71.4 (2)C9—C8—C13—C12−1.6 (2)
C6—C1—C2—C7178.02 (14)C10—C9—C14—O4−19.9 (2)
C1—C2—C3—C41.9 (2)C8—C9—C14—O4162.91 (15)
C7—C2—C3—C4−178.95 (15)C10—C9—C14—O3157.33 (15)
C2—C3—C4—C50.6 (2)C8—C9—C14—O3−19.9 (2)
C3—C4—C5—C6−2.2 (3)C17—N3—C15—C16−62.35 (18)
C4—C5—C6—C11.2 (3)C19—N3—C15—C1656.62 (19)
N1—C1—C6—C5178.09 (15)C18—N4—C16—C1557.55 (19)
C2—C1—C6—C51.3 (2)C20—N4—C16—C15−62.94 (19)
C3—C2—C7—O2−171.35 (16)N3—C15—C16—N45.0 (2)
C1—C2—C7—O27.8 (2)C19—N3—C17—C18−62.15 (18)
C3—C2—C7—O19.0 (2)C15—N3—C17—C1856.95 (18)
C1—C2—C7—O1−171.82 (15)C20—N4—C18—C1757.54 (18)
N2—C8—C9—C10178.78 (16)C16—N4—C18—C17−63.04 (18)
C13—C8—C9—C10−0.1 (2)N3—C17—C18—N44.8 (2)
N2—C8—C9—C14−4.0 (3)C17—N3—C19—C2055.90 (18)
C13—C8—C9—C14177.12 (15)C15—N3—C19—C20−62.81 (18)
C8—C9—C10—C111.8 (2)C18—N4—C20—C19−63.53 (19)
C14—C9—C10—C11−175.57 (15)C16—N4—C20—C1956.86 (19)
C9—C10—C11—C12−1.8 (3)N3—C19—C20—N45.3 (2)
C10—C11—C12—C130.0 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1O···N30.841.772.597 (2)168
N4—H5n···O30.931.642.546 (2)166
N1—H2n···O20.882.032.725 (2)135
N2—H3n···O30.882.042.696 (2)131
N1—H1n···O4i0.882.082.941 (2)165
N2—H4n···N1ii0.882.383.256 (2)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯N30.841.772.597 (2)168
N4—H5n⋯O30.931.642.546 (2)166
N1—H2n⋯O20.882.032.725 (2)135
N2—H3n⋯O30.882.042.696 (2)131
N1—H1n⋯O4i0.882.082.941 (2)165
N2—H4n⋯N1ii0.882.383.256 (2)171

Symmetry codes: (i) ; (ii) .

  4 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Benzoic acid-2,9-dimethyl-phenanthroline (1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-24

4.  Benzene-1,3-diol-1,4-diaza-bicyclo-[2.2.2]octane (1/1).

Authors:  Hadi D Arman; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31
  4 in total
  3 in total

1.  2-Amino-benzoic acid-4-(pyridin-4-yl-disulfan-yl)pyridine (1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-19

2.  1,4-Di-aza-bicyclo-[2.2.2]octane-1,4-diium bis-(3-chloro-benzoate).

Authors:  Zi-Shuo Yao; Osamu Sato
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-18

3.  Crystal structures of 1,4-di-aza-bicyclo-[2.2.2]octan-1-ium 4-nitro-benzoate dihydrate and 1,4-di-aza-bicyclo-[2.2.2]octane-1,4-diium bis-(4-nitro-benzoate): the influence of solvent upon the stoichiometry of the formed salt.

Authors:  Aina Mardia Akhmad Aznan; Zanariah Abdullah; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-23
  3 in total

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