Literature DB >> 21588465

Benzene-1,3-diol-1,4-diaza-bicyclo-[2.2.2]octane (1/1).

Hadi D Arman, Edward R T Tiekink.   

Abstract

There are two independent but virtually identical mol-ecules of each component in the asymmetric unit of the title 1:1 adduct, C(6)H(12)N(2)·C(6)H(6)O(2). In the crystal, the constituents are connected into a supra-molecular chain along the b axis by O-H⋯N hydrogen bonds. Weak C-H⋯O bonds cross-link the chains.

Entities:  

Year:  2010        PMID: 21588465      PMCID: PMC3007329          DOI: 10.1107/S1600536810030199

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related studies on co-crystal/adduct formation, see: Broker & Tiekink (2007 ▶); Broker et al. (2008 ▶); Arman et al. (2010 ▶).

Experimental

Crystal data

C6H12N2·C6H6O2 M = 222.28 Monoclinic, a = 9.3620 (19) Å b = 23.645 (5) Å c = 11.072 (2) Å β = 112.64 (3)° V = 2262.1 (8) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 98 K 0.40 × 0.25 × 0.07 mm

Data collection

Rigaku AFC12/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.423, T max = 1.000 11918 measured reflections 3973 independent reflections 3355 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.157 S = 1.00 3973 reflections 301 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810030199/hb5588sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030199/hb5588Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H12N2·C6H6O2F(000) = 960
Mr = 222.28Dx = 1.305 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 10564 reflections
a = 9.3620 (19) Åθ = 2.0–40.2°
b = 23.645 (5) ŵ = 0.09 mm1
c = 11.072 (2) ÅT = 98 K
β = 112.64 (3)°Prism, colourless
V = 2262.1 (8) Å30.40 × 0.25 × 0.07 mm
Z = 8
Rigaku AFC12K/SATURN724 diffractometer3973 independent reflections
Radiation source: fine-focus sealed tube3355 reflections with I > 2σ(I)
graphiteRint = 0.049
Detector resolution: 28.5714 pixels mm-1θmax = 25.0°, θmin = 2.2°
ω scansh = −8→11
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −25→28
Tmin = 0.423, Tmax = 1.000l = −13→13
11918 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.157H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0661P)2 + 2.685P] where P = (Fo2 + 2Fc2)/3
3973 reflections(Δ/σ)max < 0.001
301 parametersΔρmax = 0.27 e Å3
4 restraintsΔρmin = −0.24 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6822 (2)1.16554 (7)0.36932 (18)0.0301 (5)
H1O0.648 (4)1.1955 (8)0.326 (3)0.045*
O20.6063 (2)0.97031 (7)0.37749 (18)0.0314 (5)
H2O0.562 (4)0.9413 (9)0.335 (3)0.047*
O30.0808 (2)0.41271 (7)0.41406 (17)0.0263 (4)
H3O0.051 (4)0.4413 (9)0.364 (2)0.039*
O40.1800 (2)0.21654 (7)0.42386 (17)0.0266 (4)
H4O0.149 (4)0.1873 (8)0.377 (3)0.040*
N10.4071 (3)0.76680 (8)0.2317 (2)0.0228 (5)
N20.4791 (3)0.87151 (8)0.2746 (2)0.0219 (5)
N30.0069 (3)0.01097 (8)0.22198 (19)0.0205 (5)
N40.0848 (3)0.11358 (8)0.30117 (19)0.0202 (5)
C10.2920 (3)0.80228 (10)0.1308 (3)0.0269 (6)
H1A0.18920.79760.13560.032*
H1B0.28380.79010.04280.032*
C20.3406 (3)0.86513 (10)0.1519 (2)0.0245 (6)
H2A0.36390.87890.07700.029*
H2B0.25460.88810.15680.029*
C30.5626 (3)0.77703 (10)0.2309 (3)0.0262 (6)
H3A0.56220.76780.14350.031*
H3B0.63910.75220.29610.031*
C40.6094 (3)0.83966 (10)0.2637 (3)0.0269 (6)
H4A0.70050.84200.34730.032*
H4B0.63780.85640.19410.032*
C50.4101 (4)0.78343 (10)0.3614 (3)0.0275 (6)
H5A0.49110.76170.43070.033*
H5B0.30900.77470.36630.033*
C60.4438 (4)0.84720 (10)0.3833 (2)0.0274 (6)
H6A0.35280.86670.38870.033*
H6B0.53290.85320.46710.033*
C7−0.1050 (3)0.05173 (10)0.1344 (2)0.0240 (6)
H7A−0.20730.04640.13960.029*
H7B−0.11660.04480.04290.029*
C8−0.0488 (3)0.11313 (10)0.1737 (2)0.0240 (6)
H8A−0.01810.13030.10570.029*
H8B−0.13420.13600.18030.029*
C90.1632 (3)0.02439 (10)0.2251 (3)0.0241 (6)
H9A0.16090.02370.13500.029*
H9B0.2378−0.00460.27700.029*
C100.2163 (3)0.08326 (10)0.2863 (3)0.0249 (6)
H10A0.30180.07900.37290.030*
H10B0.25520.10550.22960.030*
C110.0090 (3)0.01896 (10)0.3555 (2)0.0239 (6)
H11A0.0908−0.00500.41820.029*
H11B−0.09170.00720.35720.029*
C120.0401 (3)0.08194 (10)0.3972 (2)0.0227 (6)
H12A−0.05430.09890.40190.027*
H12B0.12410.08440.48500.027*
C130.6158 (3)1.11889 (10)0.2989 (3)0.0227 (6)
C140.6381 (3)1.06812 (10)0.3673 (2)0.0237 (6)
H140.69571.06780.45910.028*
C150.5772 (3)1.01792 (10)0.3030 (2)0.0221 (5)
C160.4901 (3)1.01835 (10)0.1682 (2)0.0234 (6)
H160.44800.98430.12310.028*
C170.4663 (3)1.06950 (10)0.1012 (2)0.0245 (6)
H170.40671.07000.00970.029*
C180.5274 (3)1.11975 (10)0.1644 (2)0.0238 (6)
H180.50951.15430.11710.029*
C190.0690 (3)0.36384 (10)0.3458 (2)0.0207 (5)
C200.1297 (3)0.31467 (10)0.4162 (2)0.0219 (5)
H200.17910.31610.50890.026*
C210.1181 (3)0.26331 (10)0.3511 (2)0.0205 (5)
C220.0461 (3)0.26154 (10)0.2147 (2)0.0234 (6)
H220.03770.22670.16960.028*
C23−0.0129 (3)0.31076 (10)0.1454 (2)0.0246 (6)
H23−0.06010.30940.05260.030*
C24−0.0042 (3)0.36198 (10)0.2093 (2)0.0235 (6)
H24−0.04730.39530.16110.028*
U11U22U33U12U13U23
O10.0397 (12)0.0137 (9)0.0289 (10)−0.0014 (8)0.0046 (9)−0.0009 (7)
O20.0439 (13)0.0143 (9)0.0301 (10)−0.0031 (8)0.0077 (10)0.0008 (7)
O30.0398 (12)0.0156 (8)0.0241 (9)0.0037 (8)0.0132 (9)0.0001 (7)
O40.0385 (12)0.0141 (8)0.0251 (9)0.0026 (8)0.0098 (9)0.0011 (7)
N10.0286 (13)0.0180 (10)0.0238 (11)0.0002 (9)0.0124 (10)−0.0012 (8)
N20.0272 (13)0.0181 (10)0.0226 (11)−0.0002 (9)0.0121 (10)0.0000 (8)
N30.0256 (12)0.0182 (10)0.0204 (10)0.0006 (8)0.0118 (9)−0.0003 (8)
N40.0245 (12)0.0172 (10)0.0211 (10)0.0004 (8)0.0114 (9)0.0006 (8)
C10.0279 (15)0.0211 (13)0.0276 (13)0.0016 (11)0.0062 (12)−0.0009 (10)
C20.0265 (15)0.0200 (12)0.0261 (13)0.0020 (10)0.0092 (12)0.0016 (10)
C30.0283 (15)0.0238 (13)0.0289 (13)0.0026 (11)0.0137 (12)−0.0024 (10)
C40.0273 (15)0.0246 (13)0.0326 (14)−0.0010 (11)0.0158 (12)−0.0009 (11)
C50.0372 (17)0.0230 (13)0.0262 (13)−0.0039 (11)0.0164 (13)0.0014 (10)
C60.0378 (17)0.0245 (13)0.0239 (13)−0.0037 (11)0.0162 (13)−0.0026 (10)
C70.0278 (15)0.0211 (12)0.0225 (12)−0.0004 (10)0.0090 (12)0.0010 (10)
C80.0309 (16)0.0184 (12)0.0218 (12)0.0016 (11)0.0091 (12)0.0018 (10)
C90.0290 (15)0.0199 (12)0.0274 (13)0.0017 (11)0.0152 (12)−0.0017 (10)
C100.0248 (15)0.0229 (12)0.0304 (13)−0.0024 (11)0.0145 (12)−0.0044 (10)
C110.0333 (16)0.0190 (12)0.0225 (12)0.0013 (11)0.0142 (12)0.0026 (10)
C120.0281 (15)0.0237 (12)0.0205 (12)0.0008 (10)0.0138 (12)−0.0004 (10)
C130.0221 (14)0.0177 (12)0.0302 (13)0.0000 (10)0.0121 (12)−0.0013 (10)
C140.0249 (14)0.0218 (12)0.0223 (12)0.0035 (10)0.0069 (11)0.0006 (10)
C150.0231 (14)0.0174 (12)0.0288 (13)0.0009 (10)0.0134 (12)0.0005 (10)
C160.0263 (15)0.0199 (12)0.0262 (13)−0.0015 (10)0.0126 (12)−0.0040 (10)
C170.0246 (15)0.0294 (13)0.0221 (12)0.0010 (11)0.0120 (11)−0.0021 (10)
C180.0286 (15)0.0193 (12)0.0258 (13)0.0026 (10)0.0127 (12)0.0037 (10)
C190.0199 (14)0.0183 (12)0.0265 (13)−0.0023 (10)0.0118 (11)−0.0011 (10)
C200.0249 (14)0.0228 (12)0.0205 (12)−0.0013 (10)0.0116 (11)−0.0001 (10)
C210.0231 (14)0.0183 (12)0.0239 (12)−0.0002 (10)0.0132 (11)0.0016 (9)
C220.0285 (15)0.0167 (12)0.0265 (13)−0.0028 (10)0.0123 (12)−0.0037 (10)
C230.0287 (15)0.0252 (13)0.0217 (12)−0.0024 (11)0.0117 (11)−0.0003 (10)
C240.0253 (15)0.0210 (12)0.0253 (13)0.0015 (10)0.0110 (12)0.0032 (10)
O1—C131.356 (3)C7—C81.548 (3)
O1—H1O0.85 (2)C7—H7A0.9900
O2—C151.360 (3)C7—H7B0.9900
O2—H2O0.85 (3)C8—H8A0.9900
O3—C191.362 (3)C8—H8B0.9900
O3—H3O0.85 (2)C9—C101.544 (3)
O4—C211.360 (3)C9—H9A0.9900
O4—H4O0.85 (2)C9—H9B0.9900
N1—C11.479 (3)C10—H10A0.9900
N1—C31.479 (4)C10—H10B0.9900
N1—C51.479 (3)C11—C121.553 (3)
N2—C41.477 (3)C11—H11A0.9900
N2—C61.482 (3)C11—H11B0.9900
N2—C21.481 (3)C12—H12A0.9900
N3—C71.478 (3)C12—H12B0.9900
N3—C111.483 (3)C13—C141.392 (3)
N3—C91.484 (3)C13—C181.397 (4)
N4—C81.482 (3)C14—C151.389 (3)
N4—C121.486 (3)C14—H140.9500
N4—C101.488 (3)C15—C161.398 (4)
C1—C21.545 (3)C16—C171.391 (3)
C1—H1A0.9900C16—H160.9500
C1—H1B0.9900C17—C181.386 (3)
C2—H2A0.9900C17—H170.9500
C2—H2B0.9900C18—H180.9500
C3—C41.547 (3)C19—C201.393 (3)
C3—H3A0.9900C19—C241.399 (3)
C3—H3B0.9900C20—C211.395 (3)
C4—H4A0.9900C20—H200.9500
C4—H4B0.9900C21—C221.397 (3)
C5—C61.541 (3)C22—C231.387 (3)
C5—H5A0.9900C22—H220.9500
C5—H5B0.9900C23—C241.389 (3)
C6—H6A0.9900C23—H230.9500
C6—H6B0.9900C24—H240.9500
C13—O1—H1O111 (2)C7—C8—H8B109.6
C15—O2—H2O113 (2)H8A—C8—H8B108.1
C19—O3—H3O112 (2)N3—C9—C10110.6 (2)
C21—O4—H4O110 (2)N3—C9—H9A109.5
C1—N1—C3109.6 (2)C10—C9—H9A109.5
C1—N1—C5108.6 (2)N3—C9—H9B109.5
C3—N1—C5108.2 (2)C10—C9—H9B109.5
C4—N2—C6108.5 (2)H9A—C9—H9B108.1
C4—N2—C2109.38 (19)N4—C10—C9110.0 (2)
C6—N2—C2108.4 (2)N4—C10—H10A109.7
C7—N3—C11107.77 (19)C9—C10—H10A109.7
C7—N3—C9108.61 (19)N4—C10—H10B109.7
C11—N3—C9108.3 (2)C9—C10—H10B109.7
C8—N4—C12108.1 (2)H10A—C10—H10B108.2
C8—N4—C10108.79 (19)N3—C11—C12110.32 (19)
C12—N4—C10108.05 (19)N3—C11—H11A109.6
N1—C1—C2110.2 (2)C12—C11—H11A109.6
N1—C1—H1A109.6N3—C11—H11B109.6
C2—C1—H1A109.6C12—C11—H11B109.6
N1—C1—H1B109.6H11A—C11—H11B108.1
C2—C1—H1B109.6N4—C12—C11110.03 (19)
H1A—C1—H1B108.1N4—C12—H12A109.7
N2—C2—C1109.9 (2)C11—C12—H12A109.7
N2—C2—H2A109.7N4—C12—H12B109.7
C1—C2—H2A109.7C11—C12—H12B109.7
N2—C2—H2B109.7H12A—C12—H12B108.2
C1—C2—H2B109.7O1—C13—C14116.7 (2)
H2A—C2—H2B108.2O1—C13—C18123.6 (2)
N1—C3—C4110.2 (2)C14—C13—C18119.7 (2)
N1—C3—H3A109.6C13—C14—C15120.8 (2)
C4—C3—H3A109.6C13—C14—H14119.6
N1—C3—H3B109.6C15—C14—H14119.6
C4—C3—H3B109.6O2—C15—C14116.7 (2)
H3A—C3—H3B108.1O2—C15—C16123.5 (2)
N2—C4—C3109.8 (2)C14—C15—C16119.8 (2)
N2—C4—H4A109.7C17—C16—C15118.9 (2)
C3—C4—H4A109.7C17—C16—H16120.5
N2—C4—H4B109.7C15—C16—H16120.5
C3—C4—H4B109.7C18—C17—C16121.7 (2)
H4A—C4—H4B108.2C18—C17—H17119.2
N1—C5—C6109.8 (2)C16—C17—H17119.1
N1—C5—H5A109.7C17—C18—C13119.1 (2)
C6—C5—H5A109.7C17—C18—H18120.5
N1—C5—H5B109.7C13—C18—H18120.5
C6—C5—H5B109.7O3—C19—C20118.0 (2)
H5A—C5—H5B108.2O3—C19—C24121.8 (2)
N2—C6—C5110.4 (2)C20—C19—C24120.2 (2)
N2—C6—H6A109.6C21—C20—C19120.2 (2)
C5—C6—H6A109.6C21—C20—H20119.9
N2—C6—H6B109.6C19—C20—H20119.9
C5—C6—H6B109.6O4—C21—C20118.1 (2)
H6A—C6—H6B108.1O4—C21—C22122.3 (2)
N3—C7—C8110.4 (2)C20—C21—C22119.6 (2)
N3—C7—H7A109.6C23—C22—C21119.8 (2)
C8—C7—H7A109.6C23—C22—H22120.1
N3—C7—H7B109.6C21—C22—H22120.1
C8—C7—H7B109.6C22—C23—C24121.1 (2)
H7A—C7—H7B108.1C22—C23—H23119.4
N4—C8—C7110.20 (19)C24—C23—H23119.4
N4—C8—H8A109.6C23—C24—C19119.1 (2)
C7—C8—H8A109.6C23—C24—H24120.5
N4—C8—H8B109.6C19—C24—H24120.5
D—H···AD—HH···AD···AD—H···A
O1—H1O···N1i0.85 (2)1.81 (2)2.639 (3)167 (3)
O2—H2O···N20.85 (3)1.84 (2)2.670 (3)169 (3)
O3—H3O···N3ii0.85 (2)1.88 (2)2.718 (3)171 (2)
O4—H4O···N40.85 (2)1.93 (2)2.763 (3)169 (3)
C23—H23···O1iii0.952.553.330 (3)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯N1i0.85 (2)1.81 (2)2.639 (3)167 (3)
O2—H2O⋯N20.85 (3)1.84 (2)2.670 (3)169 (3)
O3—H3O⋯N3ii0.85 (2)1.88 (2)2.718 (3)171 (2)
O4—H4O⋯N40.85 (2)1.93 (2)2.763 (3)169 (3)
C23—H23⋯O1iii0.952.553.330 (3)139

Symmetry codes: (i) ; (ii) ; (iii) .

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