| Literature DB >> 21588465 |
Hadi D Arman, Edward R T Tiekink.
Abstract
There are two independent but virtually identical mol-ecules of each component in the asymmetric unit of the title 1:1 adduct, C(6)H(12)N(2)·C(6)H(6)O(2). In the crystal, the constituents are connected into a supra-molecular chain along the b axis by O-H⋯N hydrogen bonds. Weak C-H⋯O bonds cross-link the chains.Entities:
Year: 2010 PMID: 21588465 PMCID: PMC3007329 DOI: 10.1107/S1600536810030199
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H12N2·C6H6O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 10564 reflections |
| θ = 2.0–40.2° | |
| µ = 0.09 mm−1 | |
| β = 112.64 (3)° | Prism, colourless |
| 0.40 × 0.25 × 0.07 mm | |
| Rigaku AFC12K/SATURN724 diffractometer | 3973 independent reflections |
| Radiation source: fine-focus sealed tube | 3355 reflections with |
| graphite | |
| Detector resolution: 28.5714 pixels mm-1 | θmax = 25.0°, θmin = 2.2° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 11918 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3973 reflections | (Δ/σ)max < 0.001 |
| 301 parameters | Δρmax = 0.27 e Å−3 |
| 4 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.6822 (2) | 1.16554 (7) | 0.36932 (18) | 0.0301 (5) | |
| H1O | 0.648 (4) | 1.1955 (8) | 0.326 (3) | 0.045* | |
| O2 | 0.6063 (2) | 0.97031 (7) | 0.37749 (18) | 0.0314 (5) | |
| H2O | 0.562 (4) | 0.9413 (9) | 0.335 (3) | 0.047* | |
| O3 | 0.0808 (2) | 0.41271 (7) | 0.41406 (17) | 0.0263 (4) | |
| H3O | 0.051 (4) | 0.4413 (9) | 0.364 (2) | 0.039* | |
| O4 | 0.1800 (2) | 0.21654 (7) | 0.42386 (17) | 0.0266 (4) | |
| H4O | 0.149 (4) | 0.1873 (8) | 0.377 (3) | 0.040* | |
| N1 | 0.4071 (3) | 0.76680 (8) | 0.2317 (2) | 0.0228 (5) | |
| N2 | 0.4791 (3) | 0.87151 (8) | 0.2746 (2) | 0.0219 (5) | |
| N3 | 0.0069 (3) | 0.01097 (8) | 0.22198 (19) | 0.0205 (5) | |
| N4 | 0.0848 (3) | 0.11358 (8) | 0.30117 (19) | 0.0202 (5) | |
| C1 | 0.2920 (3) | 0.80228 (10) | 0.1308 (3) | 0.0269 (6) | |
| H1A | 0.1892 | 0.7976 | 0.1356 | 0.032* | |
| H1B | 0.2838 | 0.7901 | 0.0428 | 0.032* | |
| C2 | 0.3406 (3) | 0.86513 (10) | 0.1519 (2) | 0.0245 (6) | |
| H2A | 0.3639 | 0.8789 | 0.0770 | 0.029* | |
| H2B | 0.2546 | 0.8881 | 0.1568 | 0.029* | |
| C3 | 0.5626 (3) | 0.77703 (10) | 0.2309 (3) | 0.0262 (6) | |
| H3A | 0.5622 | 0.7678 | 0.1435 | 0.031* | |
| H3B | 0.6391 | 0.7522 | 0.2961 | 0.031* | |
| C4 | 0.6094 (3) | 0.83966 (10) | 0.2637 (3) | 0.0269 (6) | |
| H4A | 0.7005 | 0.8420 | 0.3473 | 0.032* | |
| H4B | 0.6378 | 0.8564 | 0.1941 | 0.032* | |
| C5 | 0.4101 (4) | 0.78343 (10) | 0.3614 (3) | 0.0275 (6) | |
| H5A | 0.4911 | 0.7617 | 0.4307 | 0.033* | |
| H5B | 0.3090 | 0.7747 | 0.3663 | 0.033* | |
| C6 | 0.4438 (4) | 0.84720 (10) | 0.3833 (2) | 0.0274 (6) | |
| H6A | 0.3528 | 0.8667 | 0.3887 | 0.033* | |
| H6B | 0.5329 | 0.8532 | 0.4671 | 0.033* | |
| C7 | −0.1050 (3) | 0.05173 (10) | 0.1344 (2) | 0.0240 (6) | |
| H7A | −0.2073 | 0.0464 | 0.1396 | 0.029* | |
| H7B | −0.1166 | 0.0448 | 0.0429 | 0.029* | |
| C8 | −0.0488 (3) | 0.11313 (10) | 0.1737 (2) | 0.0240 (6) | |
| H8A | −0.0181 | 0.1303 | 0.1057 | 0.029* | |
| H8B | −0.1342 | 0.1360 | 0.1803 | 0.029* | |
| C9 | 0.1632 (3) | 0.02439 (10) | 0.2251 (3) | 0.0241 (6) | |
| H9A | 0.1609 | 0.0237 | 0.1350 | 0.029* | |
| H9B | 0.2378 | −0.0046 | 0.2770 | 0.029* | |
| C10 | 0.2163 (3) | 0.08326 (10) | 0.2863 (3) | 0.0249 (6) | |
| H10A | 0.3018 | 0.0790 | 0.3729 | 0.030* | |
| H10B | 0.2552 | 0.1055 | 0.2296 | 0.030* | |
| C11 | 0.0090 (3) | 0.01896 (10) | 0.3555 (2) | 0.0239 (6) | |
| H11A | 0.0908 | −0.0050 | 0.4182 | 0.029* | |
| H11B | −0.0917 | 0.0072 | 0.3572 | 0.029* | |
| C12 | 0.0401 (3) | 0.08194 (10) | 0.3972 (2) | 0.0227 (6) | |
| H12A | −0.0543 | 0.0989 | 0.4019 | 0.027* | |
| H12B | 0.1241 | 0.0844 | 0.4850 | 0.027* | |
| C13 | 0.6158 (3) | 1.11889 (10) | 0.2989 (3) | 0.0227 (6) | |
| C14 | 0.6381 (3) | 1.06812 (10) | 0.3673 (2) | 0.0237 (6) | |
| H14 | 0.6957 | 1.0678 | 0.4591 | 0.028* | |
| C15 | 0.5772 (3) | 1.01792 (10) | 0.3030 (2) | 0.0221 (5) | |
| C16 | 0.4901 (3) | 1.01835 (10) | 0.1682 (2) | 0.0234 (6) | |
| H16 | 0.4480 | 0.9843 | 0.1231 | 0.028* | |
| C17 | 0.4663 (3) | 1.06950 (10) | 0.1012 (2) | 0.0245 (6) | |
| H17 | 0.4067 | 1.0700 | 0.0097 | 0.029* | |
| C18 | 0.5274 (3) | 1.11975 (10) | 0.1644 (2) | 0.0238 (6) | |
| H18 | 0.5095 | 1.1543 | 0.1171 | 0.029* | |
| C19 | 0.0690 (3) | 0.36384 (10) | 0.3458 (2) | 0.0207 (5) | |
| C20 | 0.1297 (3) | 0.31467 (10) | 0.4162 (2) | 0.0219 (5) | |
| H20 | 0.1791 | 0.3161 | 0.5089 | 0.026* | |
| C21 | 0.1181 (3) | 0.26331 (10) | 0.3511 (2) | 0.0205 (5) | |
| C22 | 0.0461 (3) | 0.26154 (10) | 0.2147 (2) | 0.0234 (6) | |
| H22 | 0.0377 | 0.2267 | 0.1696 | 0.028* | |
| C23 | −0.0129 (3) | 0.31076 (10) | 0.1454 (2) | 0.0246 (6) | |
| H23 | −0.0601 | 0.3094 | 0.0526 | 0.030* | |
| C24 | −0.0042 (3) | 0.36198 (10) | 0.2093 (2) | 0.0235 (6) | |
| H24 | −0.0473 | 0.3953 | 0.1611 | 0.028* |
| O1 | 0.0397 (12) | 0.0137 (9) | 0.0289 (10) | −0.0014 (8) | 0.0046 (9) | −0.0009 (7) |
| O2 | 0.0439 (13) | 0.0143 (9) | 0.0301 (10) | −0.0031 (8) | 0.0077 (10) | 0.0008 (7) |
| O3 | 0.0398 (12) | 0.0156 (8) | 0.0241 (9) | 0.0037 (8) | 0.0132 (9) | 0.0001 (7) |
| O4 | 0.0385 (12) | 0.0141 (8) | 0.0251 (9) | 0.0026 (8) | 0.0098 (9) | 0.0011 (7) |
| N1 | 0.0286 (13) | 0.0180 (10) | 0.0238 (11) | 0.0002 (9) | 0.0124 (10) | −0.0012 (8) |
| N2 | 0.0272 (13) | 0.0181 (10) | 0.0226 (11) | −0.0002 (9) | 0.0121 (10) | 0.0000 (8) |
| N3 | 0.0256 (12) | 0.0182 (10) | 0.0204 (10) | 0.0006 (8) | 0.0118 (9) | −0.0003 (8) |
| N4 | 0.0245 (12) | 0.0172 (10) | 0.0211 (10) | 0.0004 (8) | 0.0114 (9) | 0.0006 (8) |
| C1 | 0.0279 (15) | 0.0211 (13) | 0.0276 (13) | 0.0016 (11) | 0.0062 (12) | −0.0009 (10) |
| C2 | 0.0265 (15) | 0.0200 (12) | 0.0261 (13) | 0.0020 (10) | 0.0092 (12) | 0.0016 (10) |
| C3 | 0.0283 (15) | 0.0238 (13) | 0.0289 (13) | 0.0026 (11) | 0.0137 (12) | −0.0024 (10) |
| C4 | 0.0273 (15) | 0.0246 (13) | 0.0326 (14) | −0.0010 (11) | 0.0158 (12) | −0.0009 (11) |
| C5 | 0.0372 (17) | 0.0230 (13) | 0.0262 (13) | −0.0039 (11) | 0.0164 (13) | 0.0014 (10) |
| C6 | 0.0378 (17) | 0.0245 (13) | 0.0239 (13) | −0.0037 (11) | 0.0162 (13) | −0.0026 (10) |
| C7 | 0.0278 (15) | 0.0211 (12) | 0.0225 (12) | −0.0004 (10) | 0.0090 (12) | 0.0010 (10) |
| C8 | 0.0309 (16) | 0.0184 (12) | 0.0218 (12) | 0.0016 (11) | 0.0091 (12) | 0.0018 (10) |
| C9 | 0.0290 (15) | 0.0199 (12) | 0.0274 (13) | 0.0017 (11) | 0.0152 (12) | −0.0017 (10) |
| C10 | 0.0248 (15) | 0.0229 (12) | 0.0304 (13) | −0.0024 (11) | 0.0145 (12) | −0.0044 (10) |
| C11 | 0.0333 (16) | 0.0190 (12) | 0.0225 (12) | 0.0013 (11) | 0.0142 (12) | 0.0026 (10) |
| C12 | 0.0281 (15) | 0.0237 (12) | 0.0205 (12) | 0.0008 (10) | 0.0138 (12) | −0.0004 (10) |
| C13 | 0.0221 (14) | 0.0177 (12) | 0.0302 (13) | 0.0000 (10) | 0.0121 (12) | −0.0013 (10) |
| C14 | 0.0249 (14) | 0.0218 (12) | 0.0223 (12) | 0.0035 (10) | 0.0069 (11) | 0.0006 (10) |
| C15 | 0.0231 (14) | 0.0174 (12) | 0.0288 (13) | 0.0009 (10) | 0.0134 (12) | 0.0005 (10) |
| C16 | 0.0263 (15) | 0.0199 (12) | 0.0262 (13) | −0.0015 (10) | 0.0126 (12) | −0.0040 (10) |
| C17 | 0.0246 (15) | 0.0294 (13) | 0.0221 (12) | 0.0010 (11) | 0.0120 (11) | −0.0021 (10) |
| C18 | 0.0286 (15) | 0.0193 (12) | 0.0258 (13) | 0.0026 (10) | 0.0127 (12) | 0.0037 (10) |
| C19 | 0.0199 (14) | 0.0183 (12) | 0.0265 (13) | −0.0023 (10) | 0.0118 (11) | −0.0011 (10) |
| C20 | 0.0249 (14) | 0.0228 (12) | 0.0205 (12) | −0.0013 (10) | 0.0116 (11) | −0.0001 (10) |
| C21 | 0.0231 (14) | 0.0183 (12) | 0.0239 (12) | −0.0002 (10) | 0.0132 (11) | 0.0016 (9) |
| C22 | 0.0285 (15) | 0.0167 (12) | 0.0265 (13) | −0.0028 (10) | 0.0123 (12) | −0.0037 (10) |
| C23 | 0.0287 (15) | 0.0252 (13) | 0.0217 (12) | −0.0024 (11) | 0.0117 (11) | −0.0003 (10) |
| C24 | 0.0253 (15) | 0.0210 (12) | 0.0253 (13) | 0.0015 (10) | 0.0110 (12) | 0.0032 (10) |
| O1—C13 | 1.356 (3) | C7—C8 | 1.548 (3) |
| O1—H1O | 0.85 (2) | C7—H7A | 0.9900 |
| O2—C15 | 1.360 (3) | C7—H7B | 0.9900 |
| O2—H2O | 0.85 (3) | C8—H8A | 0.9900 |
| O3—C19 | 1.362 (3) | C8—H8B | 0.9900 |
| O3—H3O | 0.85 (2) | C9—C10 | 1.544 (3) |
| O4—C21 | 1.360 (3) | C9—H9A | 0.9900 |
| O4—H4O | 0.85 (2) | C9—H9B | 0.9900 |
| N1—C1 | 1.479 (3) | C10—H10A | 0.9900 |
| N1—C3 | 1.479 (4) | C10—H10B | 0.9900 |
| N1—C5 | 1.479 (3) | C11—C12 | 1.553 (3) |
| N2—C4 | 1.477 (3) | C11—H11A | 0.9900 |
| N2—C6 | 1.482 (3) | C11—H11B | 0.9900 |
| N2—C2 | 1.481 (3) | C12—H12A | 0.9900 |
| N3—C7 | 1.478 (3) | C12—H12B | 0.9900 |
| N3—C11 | 1.483 (3) | C13—C14 | 1.392 (3) |
| N3—C9 | 1.484 (3) | C13—C18 | 1.397 (4) |
| N4—C8 | 1.482 (3) | C14—C15 | 1.389 (3) |
| N4—C12 | 1.486 (3) | C14—H14 | 0.9500 |
| N4—C10 | 1.488 (3) | C15—C16 | 1.398 (4) |
| C1—C2 | 1.545 (3) | C16—C17 | 1.391 (3) |
| C1—H1A | 0.9900 | C16—H16 | 0.9500 |
| C1—H1B | 0.9900 | C17—C18 | 1.386 (3) |
| C2—H2A | 0.9900 | C17—H17 | 0.9500 |
| C2—H2B | 0.9900 | C18—H18 | 0.9500 |
| C3—C4 | 1.547 (3) | C19—C20 | 1.393 (3) |
| C3—H3A | 0.9900 | C19—C24 | 1.399 (3) |
| C3—H3B | 0.9900 | C20—C21 | 1.395 (3) |
| C4—H4A | 0.9900 | C20—H20 | 0.9500 |
| C4—H4B | 0.9900 | C21—C22 | 1.397 (3) |
| C5—C6 | 1.541 (3) | C22—C23 | 1.387 (3) |
| C5—H5A | 0.9900 | C22—H22 | 0.9500 |
| C5—H5B | 0.9900 | C23—C24 | 1.389 (3) |
| C6—H6A | 0.9900 | C23—H23 | 0.9500 |
| C6—H6B | 0.9900 | C24—H24 | 0.9500 |
| C13—O1—H1O | 111 (2) | C7—C8—H8B | 109.6 |
| C15—O2—H2O | 113 (2) | H8A—C8—H8B | 108.1 |
| C19—O3—H3O | 112 (2) | N3—C9—C10 | 110.6 (2) |
| C21—O4—H4O | 110 (2) | N3—C9—H9A | 109.5 |
| C1—N1—C3 | 109.6 (2) | C10—C9—H9A | 109.5 |
| C1—N1—C5 | 108.6 (2) | N3—C9—H9B | 109.5 |
| C3—N1—C5 | 108.2 (2) | C10—C9—H9B | 109.5 |
| C4—N2—C6 | 108.5 (2) | H9A—C9—H9B | 108.1 |
| C4—N2—C2 | 109.38 (19) | N4—C10—C9 | 110.0 (2) |
| C6—N2—C2 | 108.4 (2) | N4—C10—H10A | 109.7 |
| C7—N3—C11 | 107.77 (19) | C9—C10—H10A | 109.7 |
| C7—N3—C9 | 108.61 (19) | N4—C10—H10B | 109.7 |
| C11—N3—C9 | 108.3 (2) | C9—C10—H10B | 109.7 |
| C8—N4—C12 | 108.1 (2) | H10A—C10—H10B | 108.2 |
| C8—N4—C10 | 108.79 (19) | N3—C11—C12 | 110.32 (19) |
| C12—N4—C10 | 108.05 (19) | N3—C11—H11A | 109.6 |
| N1—C1—C2 | 110.2 (2) | C12—C11—H11A | 109.6 |
| N1—C1—H1A | 109.6 | N3—C11—H11B | 109.6 |
| C2—C1—H1A | 109.6 | C12—C11—H11B | 109.6 |
| N1—C1—H1B | 109.6 | H11A—C11—H11B | 108.1 |
| C2—C1—H1B | 109.6 | N4—C12—C11 | 110.03 (19) |
| H1A—C1—H1B | 108.1 | N4—C12—H12A | 109.7 |
| N2—C2—C1 | 109.9 (2) | C11—C12—H12A | 109.7 |
| N2—C2—H2A | 109.7 | N4—C12—H12B | 109.7 |
| C1—C2—H2A | 109.7 | C11—C12—H12B | 109.7 |
| N2—C2—H2B | 109.7 | H12A—C12—H12B | 108.2 |
| C1—C2—H2B | 109.7 | O1—C13—C14 | 116.7 (2) |
| H2A—C2—H2B | 108.2 | O1—C13—C18 | 123.6 (2) |
| N1—C3—C4 | 110.2 (2) | C14—C13—C18 | 119.7 (2) |
| N1—C3—H3A | 109.6 | C13—C14—C15 | 120.8 (2) |
| C4—C3—H3A | 109.6 | C13—C14—H14 | 119.6 |
| N1—C3—H3B | 109.6 | C15—C14—H14 | 119.6 |
| C4—C3—H3B | 109.6 | O2—C15—C14 | 116.7 (2) |
| H3A—C3—H3B | 108.1 | O2—C15—C16 | 123.5 (2) |
| N2—C4—C3 | 109.8 (2) | C14—C15—C16 | 119.8 (2) |
| N2—C4—H4A | 109.7 | C17—C16—C15 | 118.9 (2) |
| C3—C4—H4A | 109.7 | C17—C16—H16 | 120.5 |
| N2—C4—H4B | 109.7 | C15—C16—H16 | 120.5 |
| C3—C4—H4B | 109.7 | C18—C17—C16 | 121.7 (2) |
| H4A—C4—H4B | 108.2 | C18—C17—H17 | 119.2 |
| N1—C5—C6 | 109.8 (2) | C16—C17—H17 | 119.1 |
| N1—C5—H5A | 109.7 | C17—C18—C13 | 119.1 (2) |
| C6—C5—H5A | 109.7 | C17—C18—H18 | 120.5 |
| N1—C5—H5B | 109.7 | C13—C18—H18 | 120.5 |
| C6—C5—H5B | 109.7 | O3—C19—C20 | 118.0 (2) |
| H5A—C5—H5B | 108.2 | O3—C19—C24 | 121.8 (2) |
| N2—C6—C5 | 110.4 (2) | C20—C19—C24 | 120.2 (2) |
| N2—C6—H6A | 109.6 | C21—C20—C19 | 120.2 (2) |
| C5—C6—H6A | 109.6 | C21—C20—H20 | 119.9 |
| N2—C6—H6B | 109.6 | C19—C20—H20 | 119.9 |
| C5—C6—H6B | 109.6 | O4—C21—C20 | 118.1 (2) |
| H6A—C6—H6B | 108.1 | O4—C21—C22 | 122.3 (2) |
| N3—C7—C8 | 110.4 (2) | C20—C21—C22 | 119.6 (2) |
| N3—C7—H7A | 109.6 | C23—C22—C21 | 119.8 (2) |
| C8—C7—H7A | 109.6 | C23—C22—H22 | 120.1 |
| N3—C7—H7B | 109.6 | C21—C22—H22 | 120.1 |
| C8—C7—H7B | 109.6 | C22—C23—C24 | 121.1 (2) |
| H7A—C7—H7B | 108.1 | C22—C23—H23 | 119.4 |
| N4—C8—C7 | 110.20 (19) | C24—C23—H23 | 119.4 |
| N4—C8—H8A | 109.6 | C23—C24—C19 | 119.1 (2) |
| C7—C8—H8A | 109.6 | C23—C24—H24 | 120.5 |
| N4—C8—H8B | 109.6 | C19—C24—H24 | 120.5 |
| H··· | ||||
| O1—H1O···N1i | 0.85 (2) | 1.81 (2) | 2.639 (3) | 167 (3) |
| O2—H2O···N2 | 0.85 (3) | 1.84 (2) | 2.670 (3) | 169 (3) |
| O3—H3O···N3ii | 0.85 (2) | 1.88 (2) | 2.718 (3) | 171 (2) |
| O4—H4O···N4 | 0.85 (2) | 1.93 (2) | 2.763 (3) | 169 (3) |
| C23—H23···O1iii | 0.95 | 2.55 | 3.330 (3) | 139 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.85 (2) | 1.81 (2) | 2.639 (3) | 167 (3) |
| O2—H2 | 0.85 (3) | 1.84 (2) | 2.670 (3) | 169 (3) |
| O3—H3 | 0.85 (2) | 1.88 (2) | 2.718 (3) | 171 (2) |
| O4—H4 | 0.85 (2) | 1.93 (2) | 2.763 (3) | 169 (3) |
| C23—H23⋯O1iii | 0.95 | 2.55 | 3.330 (3) | 139 |
Symmetry codes: (i) ; (ii) ; (iii) .