Literature DB >> 21588407

Benzoic acid-2,9-dimethyl-phenanthroline (1/1).

Hadi D Arman, Trupta Kaulgud, Edward R T Tiekink.   

Abstract

The constituents of the title 1:1 co-crystal, C(7)H(6)O(2)·C(14)H(12)N(2), are connected into dimeric aggregates by a bifurcated O-H⋯N hydrogen bond; the hydroxyl-H atom is hydrogen bonded to the two N atoms of the 2,9-dimethyl-phenanthroline. The hydrogen-bonded residues are almost orthogonal to each other [dihedral angle = 78.56 (7) °]. In the crystal packing, the aggregates are assembled into layers in the bc plane by π⋯π inter-actions [ring centroid⋯ring centroid distance = 3.5577 (16) Å] involving the pyridyl rings, and C-H⋯π contacts involving the phenanthroline-H atom and the phenyl ring of the acid.

Entities:  

Year:  2010        PMID: 21588407      PMCID: PMC3007214          DOI: 10.1107/S1600536810029065

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related studies on co-crystal formation, see: Broker & Tiekink (2007 ▶); Broker et al. (2008 ▶).

Experimental

Crystal data

C7H6O2·C14H12N2 M = 330.37 Monoclinic, a = 13.575 (5) Å b = 11.645 (4) Å c = 11.148 (4) Å β = 104.832 (6)° V = 1703.6 (11) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 98 K 0.46 × 0.31 × 0.20 mm

Data collection

Rigaku AFC12/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.864, T max = 1 13167 measured reflections 3907 independent reflections 3589 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.156 S = 1.09 3907 reflections 231 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.55 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I. DOI: 10.1107/S1600536810029065/bt5303sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029065/bt5303Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H6O2·C14H12N2F(000) = 696
Mr = 330.37Dx = 1.288 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6463 reflections
a = 13.575 (5) Åθ = 2.1–40.6°
b = 11.645 (4) ŵ = 0.08 mm1
c = 11.148 (4) ÅT = 98 K
β = 104.832 (6)°Block, colourless
V = 1703.6 (11) Å30.46 × 0.31 × 0.20 mm
Z = 4
Rigaku AFC12K/SATURN724 diffractometer3907 independent reflections
Radiation source: fine-focus sealed tube3589 reflections with I > 2σ(I)
graphiteRint = 0.035
ω scansθmax = 27.5°, θmin = 2.3°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −17→17
Tmin = 0.864, Tmax = 1k = −15→15
13167 measured reflectionsl = −12→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0717P)2 + 0.8352P] where P = (Fo2 + 2Fc2)/3
3907 reflections(Δ/σ)max = 0.001
231 parametersΔρmax = 0.38 e Å3
1 restraintΔρmin = −0.55 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.25983 (16)0.62242 (12)0.73806 (12)0.0586 (5)
H1O0.276 (2)0.5534 (8)0.733 (2)0.088*
O20.22317 (11)0.60724 (11)0.53150 (11)0.0383 (3)
N10.20135 (10)0.37901 (11)0.76126 (12)0.0224 (3)
N20.39950 (10)0.44243 (10)0.79467 (11)0.0203 (3)
C10.22858 (14)0.66340 (14)0.62456 (15)0.0290 (4)
C20.20107 (11)0.78707 (13)0.62330 (14)0.0223 (3)
C30.22051 (12)0.85085 (14)0.73285 (15)0.0252 (3)
H30.24970.81470.81020.030*
C40.19729 (14)0.96692 (15)0.72878 (18)0.0335 (4)
H40.21131.01040.80330.040*
C50.15377 (16)1.01962 (16)0.6164 (2)0.0409 (5)
H50.13761.09910.61380.049*
C60.13392 (15)0.95635 (17)0.50764 (19)0.0388 (4)
H60.10370.99260.43070.047*
C70.15784 (12)0.84071 (15)0.51025 (16)0.0290 (4)
H70.14480.79800.43520.035*
C80.02727 (13)0.41778 (19)0.65105 (17)0.0383 (4)
H8A0.06270.46980.60700.058*
H8B−0.01540.46260.69260.058*
H8C−0.01560.36480.59160.058*
C90.10420 (12)0.35052 (15)0.74590 (15)0.0270 (3)
C100.07329 (13)0.26372 (16)0.81689 (16)0.0320 (4)
H100.00320.24500.80330.038*
C110.14511 (14)0.20691 (15)0.90530 (16)0.0307 (4)
H110.12520.14830.95350.037*
C120.24909 (12)0.23568 (13)0.92478 (14)0.0241 (3)
C130.27308 (11)0.32317 (12)0.84953 (13)0.0202 (3)
C140.32829 (14)0.18039 (14)1.01699 (14)0.0280 (4)
H140.31160.12101.06680.034*
C150.42676 (13)0.21252 (14)1.03328 (14)0.0278 (4)
H150.47840.17511.09450.033*
C160.45439 (12)0.30185 (13)0.95988 (14)0.0225 (3)
C170.37851 (11)0.35697 (12)0.86771 (13)0.0192 (3)
C180.55556 (12)0.33981 (14)0.97563 (14)0.0260 (3)
H180.60920.30581.03720.031*
C190.57615 (12)0.42575 (14)0.90205 (15)0.0261 (3)
H190.64410.45200.91230.031*
C200.49563 (12)0.47512 (13)0.81070 (14)0.0225 (3)
C210.51601 (14)0.56796 (15)0.72651 (16)0.0315 (4)
H21A0.46830.56030.64450.047*
H21B0.58600.56090.71860.047*
H21C0.50710.64330.76150.047*
U11U22U33U12U13U23
O10.1251 (15)0.0251 (7)0.0210 (6)0.0281 (8)0.0100 (8)0.0043 (5)
O20.0607 (9)0.0301 (7)0.0209 (6)0.0070 (6)0.0049 (6)−0.0025 (5)
N10.0235 (6)0.0242 (6)0.0198 (6)0.0004 (5)0.0060 (5)−0.0013 (5)
N20.0254 (6)0.0179 (6)0.0175 (6)−0.0008 (5)0.0054 (5)−0.0013 (4)
C10.0404 (9)0.0242 (8)0.0206 (7)0.0036 (7)0.0046 (7)0.0022 (6)
C20.0206 (7)0.0234 (7)0.0234 (7)0.0014 (5)0.0065 (6)0.0042 (6)
C30.0262 (7)0.0261 (8)0.0251 (8)0.0012 (6)0.0096 (6)0.0023 (6)
C40.0398 (9)0.0256 (8)0.0416 (10)0.0008 (7)0.0221 (8)−0.0022 (7)
C50.0503 (11)0.0248 (8)0.0562 (12)0.0117 (8)0.0293 (10)0.0124 (8)
C60.0396 (10)0.0386 (10)0.0408 (10)0.0120 (8)0.0150 (8)0.0197 (8)
C70.0262 (8)0.0337 (9)0.0268 (8)0.0031 (6)0.0063 (6)0.0078 (6)
C80.0252 (8)0.0568 (12)0.0318 (9)0.0056 (8)0.0050 (7)0.0026 (8)
C90.0248 (8)0.0330 (8)0.0235 (8)0.0002 (6)0.0067 (6)−0.0058 (6)
C100.0292 (8)0.0389 (10)0.0305 (9)−0.0096 (7)0.0124 (7)−0.0077 (7)
C110.0391 (9)0.0296 (8)0.0273 (8)−0.0099 (7)0.0155 (7)−0.0029 (6)
C120.0341 (8)0.0205 (7)0.0193 (7)−0.0034 (6)0.0098 (6)−0.0022 (6)
C130.0264 (7)0.0184 (7)0.0164 (6)−0.0008 (5)0.0066 (6)−0.0032 (5)
C140.0424 (9)0.0213 (7)0.0209 (7)−0.0022 (6)0.0089 (7)0.0029 (6)
C150.0382 (9)0.0234 (8)0.0199 (7)0.0055 (6)0.0039 (7)0.0036 (6)
C160.0285 (8)0.0210 (7)0.0173 (7)0.0039 (6)0.0046 (6)−0.0019 (5)
C170.0254 (7)0.0172 (6)0.0152 (6)0.0009 (5)0.0055 (6)−0.0026 (5)
C180.0252 (7)0.0285 (8)0.0220 (7)0.0064 (6)0.0016 (6)−0.0020 (6)
C190.0221 (7)0.0302 (8)0.0267 (8)0.0004 (6)0.0073 (6)−0.0054 (6)
C200.0274 (7)0.0213 (7)0.0201 (7)−0.0012 (6)0.0086 (6)−0.0048 (5)
C210.0354 (9)0.0294 (9)0.0315 (9)−0.0072 (7)0.0121 (7)0.0008 (7)
O1—C11.317 (2)C9—C101.412 (2)
O1—H1O0.839 (12)C10—C111.367 (3)
O2—C11.213 (2)C10—H100.9500
N1—C91.328 (2)C11—C121.412 (2)
N1—C131.3597 (19)C11—H110.9500
N2—C201.327 (2)C12—C131.410 (2)
N2—C171.3614 (19)C12—C141.436 (2)
C1—C21.487 (2)C13—C171.448 (2)
C2—C71.394 (2)C14—C151.355 (2)
C2—C31.396 (2)C14—H140.9500
C3—C41.386 (2)C15—C161.432 (2)
C3—H30.9500C15—H150.9500
C4—C51.385 (3)C16—C171.410 (2)
C4—H40.9500C16—C181.410 (2)
C5—C61.385 (3)C18—C191.367 (2)
C5—H50.9500C18—H180.9500
C6—C71.384 (3)C19—C201.411 (2)
C6—H60.9500C19—H190.9500
C7—H70.9500C20—C211.503 (2)
C8—C91.502 (2)C21—H21A0.9800
C8—H8A0.9800C21—H21B0.9800
C8—H8B0.9800C21—H21C0.9800
C8—H8C0.9800
C1—O1—H1O108 (2)C10—C11—C12119.76 (15)
C9—N1—C13118.52 (14)C10—C11—H11120.1
C20—N2—C17118.58 (13)C12—C11—H11120.1
O2—C1—O1124.10 (16)C13—C12—C11117.00 (15)
O2—C1—C2123.66 (15)C13—C12—C14120.36 (15)
O1—C1—C2112.24 (14)C11—C12—C14122.64 (15)
C7—C2—C3119.61 (15)N1—C13—C12122.99 (14)
C7—C2—C1119.28 (15)N1—C13—C17118.06 (13)
C3—C2—C1121.09 (14)C12—C13—C17118.94 (14)
C4—C3—C2120.00 (15)C15—C14—C12120.29 (15)
C4—C3—H3120.0C15—C14—H14119.9
C2—C3—H3120.0C12—C14—H14119.9
C5—C4—C3120.17 (17)C14—C15—C16121.19 (15)
C5—C4—H4119.9C14—C15—H15119.4
C3—C4—H4119.9C16—C15—H15119.4
C4—C5—C6119.92 (17)C17—C16—C18117.04 (14)
C4—C5—H5120.0C17—C16—C15119.87 (15)
C6—C5—H5120.0C18—C16—C15123.08 (14)
C7—C6—C5120.49 (17)N2—C17—C16122.89 (14)
C7—C6—H6119.8N2—C17—C13117.76 (13)
C5—C6—H6119.8C16—C17—C13119.34 (13)
C6—C7—C2119.82 (17)C19—C18—C16119.79 (14)
C6—C7—H7120.1C19—C18—H18120.1
C2—C7—H7120.1C16—C18—H18120.1
C9—C8—H8A109.5C18—C19—C20119.44 (15)
C9—C8—H8B109.5C18—C19—H19120.3
H8A—C8—H8B109.5C20—C19—H19120.3
C9—C8—H8C109.5N2—C20—C19122.25 (14)
H8A—C8—H8C109.5N2—C20—C21117.01 (14)
H8B—C8—H8C109.5C19—C20—C21120.74 (14)
N1—C9—C10122.31 (16)C20—C21—H21A109.5
N1—C9—C8116.68 (15)C20—C21—H21B109.5
C10—C9—C8120.99 (15)H21A—C21—H21B109.5
C11—C10—C9119.42 (15)C20—C21—H21C109.5
C11—C10—H10120.3H21A—C21—H21C109.5
C9—C10—H10120.3H21B—C21—H21C109.5
O2—C1—C2—C76.1 (3)C14—C12—C13—C17−0.6 (2)
O1—C1—C2—C7−174.24 (17)C13—C12—C14—C150.6 (2)
O2—C1—C2—C3−172.06 (17)C11—C12—C14—C15−178.93 (15)
O1—C1—C2—C37.6 (2)C12—C14—C15—C160.1 (2)
C7—C2—C3—C4−0.3 (2)C14—C15—C16—C17−0.8 (2)
C1—C2—C3—C4177.84 (15)C14—C15—C16—C18178.49 (15)
C2—C3—C4—C50.7 (3)C20—N2—C17—C160.2 (2)
C3—C4—C5—C6−0.4 (3)C20—N2—C17—C13179.49 (12)
C4—C5—C6—C7−0.4 (3)C18—C16—C17—N20.7 (2)
C5—C6—C7—C20.8 (3)C15—C16—C17—N2−179.97 (13)
C3—C2—C7—C6−0.5 (2)C18—C16—C17—C13−178.60 (13)
C1—C2—C7—C6−178.63 (16)C15—C16—C17—C130.7 (2)
C13—N1—C9—C10−0.7 (2)N1—C13—C17—N2−0.3 (2)
C13—N1—C9—C8177.54 (14)C12—C13—C17—N2−179.36 (13)
N1—C9—C10—C110.4 (3)N1—C13—C17—C16179.01 (13)
C8—C9—C10—C11−177.79 (16)C12—C13—C17—C160.0 (2)
C9—C10—C11—C120.1 (2)C17—C16—C18—C19−0.6 (2)
C10—C11—C12—C13−0.3 (2)C15—C16—C18—C19−179.93 (15)
C10—C11—C12—C14179.27 (15)C16—C18—C19—C20−0.3 (2)
C9—N1—C13—C120.6 (2)C17—N2—C20—C19−1.1 (2)
C9—N1—C13—C17−178.42 (13)C17—N2—C20—C21178.74 (13)
C11—C12—C13—N1−0.1 (2)C18—C19—C20—N21.2 (2)
C14—C12—C13—N1−179.61 (14)C18—C19—C20—C21−178.67 (14)
C11—C12—C13—C17178.91 (13)
Cg is the centroid of the C2–C7 ring.
D—H···AD—HH···AD···AD—H···A
O1—H1o···N10.839 (12)2.327 (16)2.973 (2)134 (2)
O1—H1o···N20.839 (12)2.09 (2)2.788 (2)141 (2)
C19—H19···Cgi0.952.603.426 (2)145
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C2–C7 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N10.84 (1)2.33 (2)2.973 (2)134 (2)
O1—H1o⋯N20.84 (1)2.09 (2)2.788 (2)141 (2)
C19—H19⋯Cgi0.952.603.426 (2)145

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  7 in total

1.  2,2'-(Disulfanediyl)dibenzoic acid-N,N'-bis-(3-pyridyl-meth-yl)ethane-diamide (1/1).

Authors:  Hadi D Arman; Tyler Miller; Pavel Poplaukhin; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-18

2.  2,2'-(Disulfanedi-yl)dibenzoic acid-N,N'-bis-(4-pyridyl-meth-yl)ethane-dithio-amide (1/1).

Authors:  Hadi D Arman; Tyler Miller; Pavel Poplaukhin; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-18

3.  4-Amino-N-(4,6-dimethyl-pyrimidin-2-yl)benzene-sulfonamide-benzoic acid (1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28

4.  Benzene-1,3-diol-1,4-diaza-bicyclo-[2.2.2]octane (1/1).

Authors:  Hadi D Arman; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

5.  2,2'-(Disulfanedi-yl)dibenzoic acid-2,9-dimethyl-phenanthroline-tetra-hydro-furan (1/2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-25

6.  2-(4-Chloro-phen-yl)acetic acid-2-{(E)-[(E)-2-(2-pyridyl-methyl-idene)hydrazin-1-yl-idene]meth-yl}pyridine (1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-21

7.  4-Aza-1-azoniabicyclo-[2.2.2]octa-ne-2-amino-benzoate-2-amino-benzoic acid (1/1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-12
  7 in total

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