| Literature DB >> 25161500 |
Aina Mardia Akhmad Aznan1, Zanariah Abdullah1, Edward R T Tiekink1.
Abstract
The 1:1 co-crystallization of 1,4-di-aza-bicyclo-[2.2.2]octane (DABCO) with 4-nitro-benzoic acid in ethanol-water (3/1) gave the salt dihydrate C6H13N2 (+)·C7H4NO4 (-)·2H2O, (1), whereas from methanol, the salt C6H14N2 (2+)·2C7H4NO4 (-), (2), was isolated. In (1), the cation and anion are linked by a strong N-H⋯O hydrogen bond, and the carboxyl-ate anion is close to planar [dihedral angle between terminal residues = 6.83 (9)°]. In (2), a three-ion aggregate is assembled by two N-H⋯O hydrogen bonds, and the carboxyl-ate anions are again close to planar [dihedral angles between terminal residues = 1.7 (3) and 5.9 (3)°]. Through the inter-vention of solvent water mol-ecules, which self-assemble into helical supra-molecular chains along the b axis, the three-dimensional architecture in (1) is stabilized by water-DABCO O-H⋯N and water-carboxyl-ate O-H⋯O hydrogen bonds, with additional stability afforded by C-H⋯O inter-actions. The global crystal structure comprises alternating layers of water mol-ecules and ion pairs stacked along the c axis. In the crystal of (2), the three-ion aggregates are assembled into a three-dimensional architecture by a large number of methyl-ene-carboxyl-ate/nitro C-H⋯O inter-actions as well as π-π contacts between inversion-related benzene rings [inter-centroid distances = 3.5644 (16) and 3.6527 (16) Å]. The cations and anions assemble into alternating layers along the c axis.Entities:
Keywords: amine; carboxylic acid; co-crystallization; crystal structure; salt formation
Year: 2014 PMID: 25161500 PMCID: PMC4120614 DOI: 10.1107/S1600536814011532
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
Figure 1The molecular structures of the four independent constituents of (1), with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen bonds are shown as dashed lines (see Table 1 ▸ for details).
Hydrogen-bond geometry (Å, °) for (1)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.89 (1) | 1.76 (1) | 2.6431 (14) | 173 (1) |
| O1 | 0.86 (2) | 1.95 (2) | 2.7974 (15) | 172 (2) |
| O1 | 0.86 (2) | 1.91 (1) | 2.7500 (15) | 165 (2) |
| O2 | 0.85 (2) | 1.87 (2) | 2.7218 (15) | 180 (2) |
| O2 | 0.86 (1) | 1.87 (1) | 2.7182 (15) | 171 (2) |
| C10—H10 | 0.99 | 2.49 | 3.4253 (17) | 158 |
| C12—H12 | 0.99 | 2.49 | 3.3711 (16) | 147 |
| C12—H12 | 0.99 | 2.57 | 3.4818 (16) | 153 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 2The molecular structures of the three independent constituents of (2), with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen bonds are shown as dashed lines (see Table 2 ▸ for details).
Hydrogen-bond geometry (Å, °) for (2)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3 | 0.88 (2) | 1.66 (2) | 2.539 (3) | 173 (2) |
| N4—H4 | 0.89 (2) | 1.65 (2) | 2.542 (3) | 175 (3) |
| C15—H15 | 0.99 | 2.42 | 3.193 (3) | 134 |
| C16—H16 | 0.99 | 2.42 | 3.375 (3) | 161 |
| C17—H17 | 0.99 | 2.42 | 3.338 (3) | 153 |
| C17—H17 | 0.99 | 2.42 | 3.313 (3) | 149 |
| C20—H20 | 0.99 | 2.41 | 3.043 (3) | 121 |
| C20—H20 | 0.99 | 2.42 | 3.339 (3) | 154 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 3Unit-cell contents shown in projection down the a axis for (1). The O—H⋯O, O—H⋯N and C—H⋯O hydrogen bonds are shown as orange, blue and green dashed lines, respectively (see Table 1 ▸ for details).
Figure 4Unit-cell contents shown in projection down the a axis for (2). The N—H⋯O and C—H⋯O hydrogen bonds are shown as blue and green dashed lines, respectively (see Table 2 ▸ for details).
Figure 5Unit-cell contents shown in projection down the b axis for (2). The N—H⋯O and C—H⋯O hydrogen bonds are shown as blue and green dashed lines, respectively (see Table 2 ▸ for details).
Experimental details
| (1) | (2) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C6H13N2 +·C7H4NO4 −·2H2O | C6H14N2 2+·2C7H4NO4 − |
|
| 315.33 | 446.42 |
| Crystal system, space group | Monoclinic, | Triclinic, |
| Temperature (K) | 100 | 100 |
|
| 6.5982 (1), 6.6074 (1), 34.4574 (6) | 9.1036 (4), 9.5027 (3), 12.0736 (3) |
| α, β, γ (°) | 90, 94.809 (1), 90 | 73.982 (3), 83.624 (3), 88.661 (3) |
|
| 1496.95 (4) | 997.68 (6) |
|
| 4 | 2 |
| Radiation type | Cu | Cu |
| μ (mm−1) | 0.94 | 0.99 |
| Crystal size (mm) | 0.30 × 0.30 × 0.20 | 0.40 × 0.40 × 0.20 |
| Data collection | ||
| Diffractometer | Agilent SuperNova Dual with an Atlas detector | Agilent SuperNova Dual with an Atlas detector |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.888, 1.000 | 0.991, 1.000 |
| No. of measured, independent and observed [ | 11203, 3072, 2949 | 17849, 4101, 3775 |
|
| 0.015 | 0.046 |
| (sin θ/λ)max (Å−1) | 0.626 | 0.626 |
| Refinement | ||
|
| 0.039, 0.099, 1.04 | 0.074, 0.229, 1.12 |
| No. of reflections | 3072 | 4101 |
| No. of parameters | 215 | 295 |
| No. of restraints | 7 | 2 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.40, −0.30 | 0.60, −0.58 |
Computer programs: CrysAlis PRO (Agilent, 2013 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| C6H13N2+·C7H4NO4−·2H2O | |
| Monoclinic, | Cu |
| Hall symbol: -P 2ybc | Cell parameters from 7046 reflections |
| θ = 3.9–76.3° | |
| µ = 0.94 mm−1 | |
| β = 94.809 (1)° | Prism, colourless |
| 0.30 × 0.30 × 0.20 mm | |
| Agilent SuperNova Dual diffractometer with an Atlas detector | 3072 independent reflections |
| Radiation source: SuperNova (Cu) X-ray Source | 2949 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 75.0°, θmin = 5.2° |
| ω scan | |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013) | |
| 11203 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 3072 reflections | Δρmax = 0.40 e Å−3 |
| 215 parameters | Δρmin = −0.30 e Å−3 |
| 7 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0076 (6) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.63866 (13) | 0.34327 (15) | 0.59514 (3) | 0.0233 (2) | |
| O2 | 0.94425 (14) | 0.33794 (16) | 0.62902 (3) | 0.0261 (2) | |
| O3 | 1.11387 (14) | 0.20664 (15) | 0.42606 (3) | 0.0234 (2) | |
| O4 | 1.40402 (14) | 0.17440 (16) | 0.45978 (3) | 0.0262 (2) | |
| N1 | 1.21908 (16) | 0.20014 (15) | 0.45723 (3) | 0.0175 (2) | |
| C1 | 0.82971 (19) | 0.32425 (18) | 0.59836 (4) | 0.0178 (3) | |
| C2 | 0.93105 (18) | 0.28490 (18) | 0.56096 (3) | 0.0153 (2) | |
| C3 | 1.13841 (18) | 0.24078 (18) | 0.56251 (3) | 0.0162 (3) | |
| H3 | 1.2149 | 0.2318 | 0.5871 | 0.019* | |
| C4 | 1.23420 (18) | 0.20989 (18) | 0.52871 (4) | 0.0163 (2) | |
| H4 | 1.3751 | 0.1786 | 0.5297 | 0.020* | |
| C5 | 1.11798 (18) | 0.22606 (17) | 0.49335 (3) | 0.0149 (2) | |
| C6 | 0.91145 (18) | 0.26736 (17) | 0.49062 (3) | 0.0155 (2) | |
| H6 | 0.8354 | 0.2752 | 0.4660 | 0.019* | |
| C7 | 0.81863 (17) | 0.29702 (18) | 0.52492 (3) | 0.0156 (2) | |
| H7 | 0.6772 | 0.3258 | 0.5238 | 0.019* | |
| N2 | 0.48292 (15) | 0.59677 (17) | 0.64400 (3) | 0.0178 (2) | |
| H2N | 0.535 (2) | 0.503 (2) | 0.6291 (4) | 0.021* | |
| N3 | 0.33337 (16) | 0.86385 (17) | 0.68589 (3) | 0.0207 (2) | |
| C8 | 0.31552 (19) | 0.7058 (2) | 0.62050 (4) | 0.0213 (3) | |
| H8A | 0.2168 | 0.6074 | 0.6082 | 0.026* | |
| H8B | 0.3720 | 0.7863 | 0.5997 | 0.026* | |
| C9 | 0.2099 (2) | 0.8456 (2) | 0.64826 (4) | 0.0309 (3) | |
| H9A | 0.1903 | 0.9811 | 0.6363 | 0.037* | |
| H9B | 0.0744 | 0.7900 | 0.6527 | 0.037* | |
| C10 | 0.64491 (19) | 0.7447 (2) | 0.65768 (4) | 0.0212 (3) | |
| H10A | 0.7121 | 0.7988 | 0.6352 | 0.025* | |
| H10B | 0.7491 | 0.6777 | 0.6756 | 0.025* | |
| C11 | 0.5423 (2) | 0.9174 (2) | 0.67881 (5) | 0.0325 (3) | |
| H11A | 0.6212 | 0.9456 | 0.7039 | 0.039* | |
| H11B | 0.5416 | 1.0418 | 0.6628 | 0.039* | |
| C12 | 0.39871 (18) | 0.49677 (19) | 0.67830 (4) | 0.0199 (3) | |
| H12A | 0.5038 | 0.4108 | 0.6923 | 0.024* | |
| H12B | 0.2810 | 0.4105 | 0.6695 | 0.024* | |
| C13 | 0.3323 (2) | 0.6654 (2) | 0.70520 (4) | 0.0257 (3) | |
| H13A | 0.1938 | 0.6361 | 0.7127 | 0.031* | |
| H13B | 0.4257 | 0.6688 | 0.7292 | 0.031* | |
| O1W | 0.19593 (16) | 1.12932 (16) | 0.74123 (3) | 0.0268 (2) | |
| H1W | 0.243 (3) | 1.058 (3) | 0.7232 (4) | 0.040* | |
| H2W | 0.151 (3) | 1.039 (2) | 0.7565 (4) | 0.040* | |
| O2W | −0.12706 (15) | 1.33213 (17) | 0.70557 (3) | 0.0289 (2) | |
| H3W | −0.026 (2) | 1.268 (3) | 0.7167 (5) | 0.043* | |
| H4W | −0.117 (3) | 1.328 (3) | 0.6810 (3) | 0.043* |
| O1 | 0.0175 (4) | 0.0299 (5) | 0.0231 (5) | 0.0006 (4) | 0.0055 (3) | −0.0078 (4) |
| O2 | 0.0235 (5) | 0.0391 (6) | 0.0158 (4) | 0.0014 (4) | 0.0025 (4) | −0.0027 (4) |
| O3 | 0.0271 (5) | 0.0281 (5) | 0.0153 (4) | 0.0000 (4) | 0.0033 (4) | 0.0001 (4) |
| O4 | 0.0181 (5) | 0.0355 (6) | 0.0262 (5) | 0.0027 (4) | 0.0087 (4) | 0.0009 (4) |
| N1 | 0.0200 (5) | 0.0147 (5) | 0.0185 (5) | −0.0011 (4) | 0.0058 (4) | 0.0004 (4) |
| C1 | 0.0190 (6) | 0.0167 (6) | 0.0181 (6) | −0.0009 (5) | 0.0042 (5) | −0.0018 (5) |
| C2 | 0.0170 (6) | 0.0122 (5) | 0.0171 (6) | −0.0017 (4) | 0.0034 (4) | −0.0006 (4) |
| C3 | 0.0165 (6) | 0.0154 (6) | 0.0165 (6) | −0.0012 (4) | −0.0004 (4) | 0.0003 (4) |
| C4 | 0.0137 (5) | 0.0144 (5) | 0.0209 (6) | −0.0006 (4) | 0.0026 (4) | 0.0007 (4) |
| C5 | 0.0178 (6) | 0.0116 (5) | 0.0159 (6) | −0.0020 (4) | 0.0053 (4) | −0.0006 (4) |
| C6 | 0.0174 (6) | 0.0124 (5) | 0.0164 (5) | −0.0022 (4) | −0.0002 (4) | 0.0002 (4) |
| C7 | 0.0135 (5) | 0.0133 (5) | 0.0200 (6) | −0.0016 (4) | 0.0021 (4) | −0.0005 (4) |
| N2 | 0.0148 (5) | 0.0219 (5) | 0.0171 (5) | 0.0002 (4) | 0.0033 (4) | −0.0034 (4) |
| N3 | 0.0212 (5) | 0.0228 (6) | 0.0187 (5) | 0.0016 (4) | 0.0044 (4) | −0.0023 (4) |
| C8 | 0.0200 (6) | 0.0270 (7) | 0.0167 (6) | 0.0018 (5) | 0.0005 (5) | −0.0011 (5) |
| C9 | 0.0331 (7) | 0.0375 (8) | 0.0217 (7) | 0.0148 (6) | −0.0002 (6) | −0.0017 (6) |
| C10 | 0.0153 (6) | 0.0274 (7) | 0.0215 (6) | −0.0047 (5) | 0.0041 (5) | −0.0018 (5) |
| C11 | 0.0276 (7) | 0.0300 (7) | 0.0416 (8) | −0.0100 (6) | 0.0126 (6) | −0.0138 (7) |
| C12 | 0.0174 (6) | 0.0207 (6) | 0.0219 (6) | −0.0009 (5) | 0.0039 (5) | 0.0027 (5) |
| C13 | 0.0299 (7) | 0.0274 (7) | 0.0210 (6) | 0.0011 (5) | 0.0104 (5) | 0.0017 (5) |
| O1W | 0.0311 (5) | 0.0285 (5) | 0.0210 (5) | 0.0053 (4) | 0.0026 (4) | −0.0024 (4) |
| O2W | 0.0258 (5) | 0.0420 (6) | 0.0191 (5) | 0.0084 (4) | 0.0041 (4) | 0.0005 (4) |
| O1—C1 | 1.2625 (15) | N3—C13 | 1.4706 (17) |
| O2—C1 | 1.2495 (16) | N3—C9 | 1.4773 (17) |
| O3—N1 | 1.2298 (14) | C8—C9 | 1.5381 (18) |
| O4—N1 | 1.2279 (14) | C8—H8A | 0.9900 |
| N1—C5 | 1.4704 (15) | C8—H8B | 0.9900 |
| C1—C2 | 1.5231 (16) | C9—H9A | 0.9900 |
| C2—C7 | 1.3943 (17) | C9—H9B | 0.9900 |
| C2—C3 | 1.3956 (16) | C10—C11 | 1.5408 (19) |
| C3—C4 | 1.3857 (17) | C10—H10A | 0.9900 |
| C3—H3 | 0.9500 | C10—H10B | 0.9900 |
| C4—C5 | 1.3884 (17) | C11—H11A | 0.9900 |
| C4—H4 | 0.9500 | C11—H11B | 0.9900 |
| C5—C6 | 1.3852 (17) | C12—C13 | 1.5365 (18) |
| C6—C7 | 1.3900 (16) | C12—H12A | 0.9900 |
| C6—H6 | 0.9500 | C12—H12B | 0.9900 |
| C7—H7 | 0.9500 | C13—H13A | 0.9900 |
| N2—C10 | 1.4951 (16) | C13—H13B | 0.9900 |
| N2—C8 | 1.4982 (16) | O1W—H1W | 0.861 (9) |
| N2—C12 | 1.5007 (15) | O1W—H2W | 0.866 (9) |
| N2—H2N | 0.892 (9) | O2W—H3W | 0.852 (9) |
| N3—C11 | 1.4635 (17) | O2W—H4W | 0.856 (9) |
| O4—N1—O3 | 123.50 (10) | N2—C8—H8B | 110.2 |
| O4—N1—C5 | 118.32 (10) | C9—C8—H8B | 110.2 |
| O3—N1—C5 | 118.18 (10) | H8A—C8—H8B | 108.5 |
| O2—C1—O1 | 126.58 (11) | N3—C9—C8 | 110.47 (11) |
| O2—C1—C2 | 116.76 (11) | N3—C9—H9A | 109.6 |
| O1—C1—C2 | 116.65 (11) | C8—C9—H9A | 109.6 |
| C7—C2—C3 | 119.51 (11) | N3—C9—H9B | 109.6 |
| C7—C2—C1 | 120.35 (11) | C8—C9—H9B | 109.6 |
| C3—C2—C1 | 120.13 (11) | H9A—C9—H9B | 108.1 |
| C4—C3—C2 | 120.90 (11) | N2—C10—C11 | 107.60 (10) |
| C4—C3—H3 | 119.6 | N2—C10—H10A | 110.2 |
| C2—C3—H3 | 119.6 | C11—C10—H10A | 110.2 |
| C3—C4—C5 | 117.96 (11) | N2—C10—H10B | 110.2 |
| C3—C4—H4 | 121.0 | C11—C10—H10B | 110.2 |
| C5—C4—H4 | 121.0 | H10A—C10—H10B | 108.5 |
| C6—C5—C4 | 122.86 (11) | N3—C11—C10 | 110.91 (11) |
| C6—C5—N1 | 118.62 (11) | N3—C11—H11A | 109.5 |
| C4—C5—N1 | 118.52 (10) | C10—C11—H11A | 109.5 |
| C5—C6—C7 | 118.10 (11) | N3—C11—H11B | 109.5 |
| C5—C6—H6 | 120.9 | C10—C11—H11B | 109.5 |
| C7—C6—H6 | 120.9 | H11A—C11—H11B | 108.0 |
| C6—C7—C2 | 120.66 (11) | N2—C12—C13 | 107.39 (10) |
| C6—C7—H7 | 119.7 | N2—C12—H12A | 110.2 |
| C2—C7—H7 | 119.7 | C13—C12—H12A | 110.2 |
| C10—N2—C8 | 109.35 (10) | N2—C12—H12B | 110.2 |
| C10—N2—C12 | 109.99 (9) | C13—C12—H12B | 110.2 |
| C8—N2—C12 | 109.42 (9) | H12A—C12—H12B | 108.5 |
| C10—N2—H2N | 109.7 (10) | N3—C13—C12 | 111.17 (10) |
| C8—N2—H2N | 109.0 (10) | N3—C13—H13A | 109.4 |
| C12—N2—H2N | 109.4 (11) | C12—C13—H13A | 109.4 |
| C11—N3—C13 | 109.35 (11) | N3—C13—H13B | 109.4 |
| C11—N3—C9 | 109.36 (11) | C12—C13—H13B | 109.4 |
| C13—N3—C9 | 107.53 (11) | H13A—C13—H13B | 108.0 |
| N2—C8—C9 | 107.72 (10) | H1W—O1W—H2W | 103.0 (15) |
| N2—C8—H8A | 110.2 | H3W—O2W—H4W | 107.8 (16) |
| C9—C8—H8A | 110.2 | ||
| O2—C1—C2—C7 | −170.56 (11) | C1—C2—C7—C6 | 178.03 (11) |
| O1—C1—C2—C7 | 8.23 (17) | C10—N2—C8—C9 | −67.76 (13) |
| O2—C1—C2—C3 | 8.02 (17) | C12—N2—C8—C9 | 52.77 (14) |
| O1—C1—C2—C3 | −173.19 (11) | C11—N3—C9—C8 | 50.98 (16) |
| C7—C2—C3—C4 | 0.32 (18) | C13—N3—C9—C8 | −67.65 (14) |
| C1—C2—C3—C4 | −178.27 (11) | N2—C8—C9—N3 | 13.17 (16) |
| C2—C3—C4—C5 | 0.59 (18) | C8—N2—C10—C11 | 53.58 (13) |
| C3—C4—C5—C6 | −1.34 (18) | C12—N2—C10—C11 | −66.60 (13) |
| C3—C4—C5—N1 | 178.05 (10) | C13—N3—C11—C10 | 51.74 (15) |
| O4—N1—C5—C6 | 176.15 (11) | C9—N3—C11—C10 | −65.75 (15) |
| O3—N1—C5—C6 | −3.43 (16) | N2—C10—C11—N3 | 11.63 (16) |
| O4—N1—C5—C4 | −3.27 (16) | C10—N2—C12—C13 | 53.46 (13) |
| O3—N1—C5—C4 | 177.15 (10) | C8—N2—C12—C13 | −66.68 (13) |
| C4—C5—C6—C7 | 1.12 (18) | C11—N3—C13—C12 | −65.51 (14) |
| N1—C5—C6—C7 | −178.28 (10) | C9—N3—C13—C12 | 53.13 (14) |
| C5—C6—C7—C2 | −0.14 (17) | N2—C12—C13—N3 | 11.20 (14) |
| C3—C2—C7—C6 | −0.56 (18) |
| H··· | ||||
| N2—H2 | 0.89 (1) | 1.76 (1) | 2.6431 (14) | 173 (1) |
| O1 | 0.86 (2) | 1.95 (2) | 2.7974 (15) | 172 (2) |
| O1 | 0.86 (2) | 1.91 (1) | 2.7500 (15) | 165 (2) |
| O2 | 0.85 (2) | 1.87 (2) | 2.7218 (15) | 180 (2) |
| O2 | 0.86 (1) | 1.87 (1) | 2.7182 (15) | 171 (2) |
| C10—H10 | 0.99 | 2.49 | 3.4253 (17) | 158 |
| C12—H12 | 0.99 | 2.49 | 3.3711 (16) | 147 |
| C12—H12 | 0.99 | 2.57 | 3.4818 (16) | 153 |
| C6H14N22+·2C7H4NO4− | |
| Triclinic, | |
| Hall symbol: -P 1 | Cu |
| Cell parameters from 10186 reflections | |
| θ = 3.8–76.8° | |
| µ = 0.99 mm−1 | |
| α = 73.982 (3)° | |
| β = 83.624 (3)° | Prism, colourless |
| γ = 88.661 (3)° | 0.40 × 0.40 × 0.20 mm |
| Agilent SuperNova Dual diffractometer with an Atlas detector | 4101 independent reflections |
| Radiation source: SuperNova (Cu) X-ray Source | 3775 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 75.0°, θmin = 3.8° |
| ω scan | |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013) | |
| 17849 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4101 reflections | (Δ/σ)max < 0.001 |
| 295 parameters | Δρmax = 0.60 e Å−3 |
| 2 restraints | Δρmin = −0.58 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.6213 (2) | 0.7377 (2) | 0.82692 (16) | 0.0320 (5) | |
| O2 | 0.4577 (2) | 0.9073 (2) | 0.75460 (15) | 0.0301 (4) | |
| O3 | 0.3598 (2) | 0.7520 (2) | 1.38056 (16) | 0.0365 (5) | |
| O4 | 0.2049 (2) | 0.9218 (2) | 1.31087 (17) | 0.0343 (5) | |
| N1 | 0.3033 (3) | 0.8347 (2) | 1.29939 (18) | 0.0278 (5) | |
| C1 | 0.5159 (3) | 0.8269 (3) | 0.8358 (2) | 0.0230 (5) | |
| C2 | 0.4601 (3) | 0.8288 (3) | 0.9588 (2) | 0.0225 (5) | |
| C3 | 0.3361 (3) | 0.9096 (3) | 0.9783 (2) | 0.0239 (5) | |
| H3A | 0.2873 | 0.9646 | 0.9148 | 0.029* | |
| C4 | 0.2829 (3) | 0.9105 (3) | 1.0906 (2) | 0.0245 (5) | |
| H4A | 0.1976 | 0.9649 | 1.1051 | 0.029* | |
| C5 | 0.3578 (3) | 0.8300 (3) | 1.1807 (2) | 0.0244 (5) | |
| C6 | 0.4829 (3) | 0.7496 (3) | 1.1642 (2) | 0.0269 (5) | |
| H6 | 0.5320 | 0.6958 | 1.2280 | 0.032* | |
| C7 | 0.5343 (3) | 0.7498 (3) | 1.0515 (2) | 0.0250 (5) | |
| H7 | 0.6202 | 0.6961 | 1.0374 | 0.030* | |
| O5 | 0.8758 (2) | 0.7357 (2) | 0.20757 (15) | 0.0345 (5) | |
| O6 | 1.0354 (2) | 0.5601 (2) | 0.27470 (17) | 0.0385 (5) | |
| O7 | 1.3135 (2) | 0.6129 (2) | −0.29233 (18) | 0.0368 (5) | |
| O8 | 1.1731 (2) | 0.7994 (2) | −0.35307 (16) | 0.0347 (5) | |
| N2 | 1.2191 (2) | 0.7014 (3) | −0.27572 (19) | 0.0287 (5) | |
| C8 | 0.9814 (3) | 0.6492 (3) | 0.1953 (2) | 0.0256 (5) | |
| C9 | 1.0424 (3) | 0.6604 (3) | 0.0705 (2) | 0.0233 (5) | |
| C10 | 1.1613 (3) | 0.5752 (3) | 0.0471 (2) | 0.0253 (5) | |
| H10 | 1.2030 | 0.5075 | 0.1090 | 0.030* | |
| C11 | 1.2196 (3) | 0.5889 (3) | −0.0670 (2) | 0.0264 (5) | |
| H11 | 1.3010 | 0.5311 | −0.0841 | 0.032* | |
| C12 | 1.1562 (3) | 0.6885 (3) | −0.1550 (2) | 0.0252 (5) | |
| C13 | 1.0376 (3) | 0.7750 (3) | −0.1345 (2) | 0.0259 (5) | |
| H13 | 0.9963 | 0.8426 | −0.1967 | 0.031* | |
| C14 | 0.9806 (3) | 0.7597 (3) | −0.0201 (2) | 0.0255 (5) | |
| H14 | 0.8989 | 0.8174 | −0.0034 | 0.031* | |
| N3 | 0.6982 (2) | 0.7378 (2) | 0.61824 (18) | 0.0254 (5) | |
| H3N | 0.665 (3) | 0.734 (4) | 0.6902 (12) | 0.030* | |
| N4 | 0.7971 (2) | 0.7223 (2) | 0.41892 (18) | 0.0261 (5) | |
| H4N | 0.830 (3) | 0.728 (4) | 0.3454 (12) | 0.031* | |
| C15 | 0.8607 (3) | 0.7624 (3) | 0.6003 (2) | 0.0274 (5) | |
| H15A | 0.9072 | 0.6984 | 0.6663 | 0.033* | |
| H15B | 0.8832 | 0.8655 | 0.5954 | 0.033* | |
| C16 | 0.9224 (3) | 0.7273 (3) | 0.4870 (2) | 0.0310 (6) | |
| H16A | 0.9946 | 0.8035 | 0.4418 | 0.037* | |
| H16B | 0.9733 | 0.6317 | 0.5047 | 0.037* | |
| C17 | 0.6672 (3) | 0.5903 (3) | 0.6066 (2) | 0.0269 (5) | |
| H17A | 0.5616 | 0.5648 | 0.6317 | 0.032* | |
| H17B | 0.7276 | 0.5163 | 0.6564 | 0.032* | |
| C18 | 0.7046 (3) | 0.5908 (3) | 0.4791 (2) | 0.0299 (6) | |
| H18A | 0.7592 | 0.5009 | 0.4744 | 0.036* | |
| H18B | 0.6127 | 0.5935 | 0.4418 | 0.036* | |
| C19 | 0.6263 (3) | 0.8510 (3) | 0.5300 (2) | 0.0304 (6) | |
| H19A | 0.6328 | 0.9477 | 0.5453 | 0.036* | |
| H19B | 0.5206 | 0.8261 | 0.5334 | 0.036* | |
| C20 | 0.7063 (3) | 0.8562 (3) | 0.4098 (2) | 0.0318 (6) | |
| H20A | 0.6330 | 0.8614 | 0.3541 | 0.038* | |
| H20B | 0.7704 | 0.9444 | 0.3814 | 0.038* |
| O1 | 0.0368 (10) | 0.0397 (11) | 0.0185 (9) | 0.0127 (8) | −0.0025 (7) | −0.0077 (7) |
| O2 | 0.0355 (10) | 0.0357 (10) | 0.0175 (8) | 0.0069 (8) | −0.0028 (7) | −0.0053 (7) |
| O3 | 0.0476 (12) | 0.0394 (11) | 0.0182 (9) | 0.0023 (9) | −0.0009 (8) | −0.0022 (8) |
| O4 | 0.0375 (11) | 0.0371 (10) | 0.0264 (9) | 0.0021 (8) | 0.0072 (8) | −0.0096 (8) |
| N1 | 0.0331 (12) | 0.0299 (11) | 0.0189 (10) | −0.0031 (9) | 0.0022 (8) | −0.0060 (8) |
| C1 | 0.0243 (11) | 0.0254 (12) | 0.0183 (11) | −0.0019 (9) | −0.0008 (9) | −0.0047 (9) |
| C2 | 0.0255 (12) | 0.0223 (11) | 0.0190 (11) | −0.0027 (9) | −0.0012 (9) | −0.0045 (9) |
| C3 | 0.0255 (12) | 0.0255 (12) | 0.0198 (11) | −0.0014 (9) | −0.0041 (9) | −0.0041 (9) |
| C4 | 0.0249 (12) | 0.0250 (12) | 0.0229 (12) | −0.0006 (9) | 0.0010 (9) | −0.0066 (9) |
| C5 | 0.0300 (12) | 0.0256 (12) | 0.0162 (11) | −0.0037 (10) | 0.0026 (9) | −0.0050 (9) |
| C6 | 0.0317 (13) | 0.0275 (12) | 0.0187 (11) | 0.0016 (10) | −0.0043 (10) | −0.0013 (9) |
| C7 | 0.0257 (12) | 0.0250 (12) | 0.0222 (12) | 0.0019 (9) | 0.0003 (9) | −0.0040 (9) |
| O5 | 0.0401 (11) | 0.0445 (11) | 0.0163 (9) | 0.0144 (9) | −0.0005 (7) | −0.0062 (8) |
| O6 | 0.0454 (12) | 0.0458 (12) | 0.0193 (9) | 0.0158 (9) | −0.0035 (8) | −0.0019 (8) |
| O7 | 0.0349 (10) | 0.0484 (12) | 0.0294 (10) | 0.0019 (9) | 0.0053 (8) | −0.0180 (9) |
| O8 | 0.0352 (10) | 0.0478 (12) | 0.0194 (9) | −0.0030 (9) | −0.0015 (7) | −0.0068 (8) |
| N2 | 0.0256 (11) | 0.0382 (12) | 0.0230 (11) | −0.0036 (9) | 0.0010 (8) | −0.0105 (9) |
| C8 | 0.0264 (12) | 0.0291 (12) | 0.0192 (12) | 0.0002 (10) | −0.0015 (9) | −0.0037 (9) |
| C9 | 0.0247 (12) | 0.0265 (12) | 0.0184 (11) | −0.0009 (9) | −0.0018 (9) | −0.0057 (9) |
| C10 | 0.0258 (12) | 0.0245 (12) | 0.0235 (12) | −0.0003 (9) | −0.0039 (10) | −0.0026 (9) |
| C11 | 0.0247 (12) | 0.0264 (12) | 0.0275 (13) | 0.0005 (9) | 0.0013 (10) | −0.0080 (10) |
| C12 | 0.0255 (12) | 0.0298 (12) | 0.0204 (12) | −0.0048 (10) | 0.0015 (9) | −0.0081 (10) |
| C13 | 0.0272 (12) | 0.0312 (13) | 0.0180 (11) | −0.0008 (10) | −0.0035 (9) | −0.0043 (9) |
| C14 | 0.0243 (12) | 0.0294 (12) | 0.0215 (12) | 0.0036 (9) | −0.0013 (9) | −0.0056 (10) |
| N3 | 0.0270 (11) | 0.0308 (11) | 0.0176 (10) | 0.0066 (9) | −0.0021 (8) | −0.0061 (8) |
| N4 | 0.0290 (11) | 0.0304 (11) | 0.0169 (10) | 0.0033 (9) | 0.0004 (8) | −0.0045 (8) |
| C15 | 0.0289 (13) | 0.0309 (13) | 0.0228 (12) | 0.0008 (10) | −0.0052 (10) | −0.0072 (10) |
| C16 | 0.0258 (12) | 0.0425 (15) | 0.0232 (12) | 0.0004 (11) | 0.0003 (10) | −0.0075 (11) |
| C17 | 0.0280 (12) | 0.0312 (13) | 0.0188 (12) | −0.0005 (10) | −0.0002 (9) | −0.0033 (9) |
| C18 | 0.0365 (14) | 0.0306 (13) | 0.0217 (12) | −0.0009 (11) | −0.0018 (10) | −0.0062 (10) |
| C19 | 0.0341 (14) | 0.0339 (14) | 0.0214 (12) | 0.0121 (11) | −0.0040 (10) | −0.0056 (10) |
| C20 | 0.0408 (15) | 0.0317 (13) | 0.0195 (12) | 0.0090 (11) | −0.0038 (10) | −0.0018 (10) |
| O1—C1 | 1.281 (3) | C12—C13 | 1.384 (4) |
| O2—C1 | 1.228 (3) | C13—C14 | 1.390 (3) |
| O3—N1 | 1.229 (3) | C13—H13 | 0.9500 |
| O4—N1 | 1.228 (3) | C14—H14 | 0.9500 |
| N1—C5 | 1.475 (3) | N3—C17 | 1.483 (3) |
| C1—C2 | 1.520 (3) | N3—C15 | 1.485 (3) |
| C2—C3 | 1.386 (3) | N3—C19 | 1.487 (3) |
| C2—C7 | 1.398 (3) | N3—H3N | 0.879 (10) |
| C3—C4 | 1.390 (3) | N4—C20 | 1.486 (3) |
| C3—H3A | 0.9500 | N4—C16 | 1.487 (3) |
| C4—C5 | 1.384 (4) | N4—C18 | 1.487 (3) |
| C4—H4A | 0.9500 | N4—H4N | 0.890 (10) |
| C5—C6 | 1.383 (4) | C15—C16 | 1.539 (3) |
| C6—C7 | 1.388 (3) | C15—H15A | 0.9900 |
| C6—H6 | 0.9500 | C15—H15B | 0.9900 |
| C7—H7 | 0.9500 | C16—H16A | 0.9900 |
| O5—C8 | 1.273 (3) | C16—H16B | 0.9900 |
| O6—C8 | 1.231 (3) | C17—C18 | 1.538 (3) |
| O7—N2 | 1.228 (3) | C17—H17A | 0.9900 |
| O8—N2 | 1.226 (3) | C17—H17B | 0.9900 |
| N2—C12 | 1.479 (3) | C18—H18A | 0.9900 |
| C8—C9 | 1.523 (3) | C18—H18B | 0.9900 |
| C9—C10 | 1.387 (3) | C19—C20 | 1.538 (3) |
| C9—C14 | 1.395 (3) | C19—H19A | 0.9900 |
| C10—C11 | 1.393 (4) | C19—H19B | 0.9900 |
| C10—H10 | 0.9500 | C20—H20A | 0.9900 |
| C11—C12 | 1.382 (4) | C20—H20B | 0.9900 |
| C11—H11 | 0.9500 | ||
| O4—N1—O3 | 124.0 (2) | C17—N3—C15 | 108.68 (19) |
| O4—N1—C5 | 117.9 (2) | C17—N3—C19 | 109.7 (2) |
| O3—N1—C5 | 118.0 (2) | C15—N3—C19 | 109.7 (2) |
| O2—C1—O1 | 125.6 (2) | C17—N3—H3N | 105 (2) |
| O2—C1—C2 | 119.0 (2) | C15—N3—H3N | 110 (2) |
| O1—C1—C2 | 115.4 (2) | C19—N3—H3N | 114 (2) |
| C3—C2—C7 | 120.3 (2) | C20—N4—C16 | 109.6 (2) |
| C3—C2—C1 | 119.7 (2) | C20—N4—C18 | 109.5 (2) |
| C7—C2—C1 | 120.0 (2) | C16—N4—C18 | 108.9 (2) |
| C2—C3—C4 | 120.2 (2) | C20—N4—H4N | 103 (2) |
| C2—C3—H3A | 119.9 | C16—N4—H4N | 111 (2) |
| C4—C3—H3A | 119.9 | C18—N4—H4N | 115 (2) |
| C5—C4—C3 | 118.2 (2) | N3—C15—C16 | 108.8 (2) |
| C5—C4—H4A | 120.9 | N3—C15—H15A | 109.9 |
| C3—C4—H4A | 120.9 | C16—C15—H15A | 109.9 |
| C6—C5—C4 | 123.2 (2) | N3—C15—H15B | 109.9 |
| C6—C5—N1 | 118.9 (2) | C16—C15—H15B | 109.9 |
| C4—C5—N1 | 117.9 (2) | H15A—C15—H15B | 108.3 |
| C5—C6—C7 | 117.9 (2) | N4—C16—C15 | 108.4 (2) |
| C5—C6—H6 | 121.1 | N4—C16—H16A | 110.0 |
| C7—C6—H6 | 121.1 | C15—C16—H16A | 110.0 |
| C6—C7—C2 | 120.3 (2) | N4—C16—H16B | 110.0 |
| C6—C7—H7 | 119.8 | C15—C16—H16B | 110.0 |
| C2—C7—H7 | 119.8 | H16A—C16—H16B | 108.4 |
| O8—N2—O7 | 124.1 (2) | N3—C17—C18 | 109.0 (2) |
| O8—N2—C12 | 118.0 (2) | N3—C17—H17A | 109.9 |
| O7—N2—C12 | 118.0 (2) | C18—C17—H17A | 109.9 |
| O6—C8—O5 | 125.5 (2) | N3—C17—H17B | 109.9 |
| O6—C8—C9 | 119.2 (2) | C18—C17—H17B | 109.9 |
| O5—C8—C9 | 115.3 (2) | H17A—C17—H17B | 108.3 |
| C10—C9—C14 | 120.2 (2) | N4—C18—C17 | 108.3 (2) |
| C10—C9—C8 | 120.2 (2) | N4—C18—H18A | 110.0 |
| C14—C9—C8 | 119.6 (2) | C17—C18—H18A | 110.0 |
| C9—C10—C11 | 120.0 (2) | N4—C18—H18B | 110.0 |
| C9—C10—H10 | 120.0 | C17—C18—H18B | 110.0 |
| C11—C10—H10 | 120.0 | H18A—C18—H18B | 108.4 |
| C12—C11—C10 | 118.5 (2) | N3—C19—C20 | 108.2 (2) |
| C12—C11—H11 | 120.8 | N3—C19—H19A | 110.1 |
| C10—C11—H11 | 120.8 | C20—C19—H19A | 110.1 |
| C11—C12—C13 | 122.9 (2) | N3—C19—H19B | 110.1 |
| C11—C12—N2 | 117.8 (2) | C20—C19—H19B | 110.1 |
| C13—C12—N2 | 119.3 (2) | H19A—C19—H19B | 108.4 |
| C12—C13—C14 | 117.9 (2) | N4—C20—C19 | 109.0 (2) |
| C12—C13—H13 | 121.1 | N4—C20—H20A | 109.9 |
| C14—C13—H13 | 121.1 | C19—C20—H20A | 109.9 |
| C13—C14—C9 | 120.5 (2) | N4—C20—H20B | 109.9 |
| C13—C14—H14 | 119.7 | C19—C20—H20B | 109.9 |
| C9—C14—H14 | 119.7 | H20A—C20—H20B | 108.3 |
| O2—C1—C2—C3 | 6.3 (4) | C10—C11—C12—N2 | −179.8 (2) |
| O1—C1—C2—C3 | −173.0 (2) | O8—N2—C12—C11 | −172.9 (2) |
| O2—C1—C2—C7 | −173.4 (2) | O7—N2—C12—C11 | 7.4 (3) |
| O1—C1—C2—C7 | 7.3 (3) | O8—N2—C12—C13 | 7.4 (3) |
| C7—C2—C3—C4 | −1.2 (4) | O7—N2—C12—C13 | −172.3 (2) |
| C1—C2—C3—C4 | 179.1 (2) | C11—C12—C13—C14 | −0.1 (4) |
| C2—C3—C4—C5 | 0.5 (4) | N2—C12—C13—C14 | 179.7 (2) |
| C3—C4—C5—C6 | 0.3 (4) | C12—C13—C14—C9 | 0.2 (4) |
| C3—C4—C5—N1 | 178.4 (2) | C10—C9—C14—C13 | −0.2 (4) |
| O4—N1—C5—C6 | 170.3 (2) | C8—C9—C14—C13 | 178.0 (2) |
| O3—N1—C5—C6 | −9.1 (4) | C17—N3—C15—C16 | 50.7 (3) |
| O4—N1—C5—C4 | −7.9 (3) | C19—N3—C15—C16 | −69.2 (3) |
| O3—N1—C5—C4 | 172.7 (2) | C20—N4—C16—C15 | 50.2 (3) |
| C4—C5—C6—C7 | −0.3 (4) | C18—N4—C16—C15 | −69.6 (3) |
| N1—C5—C6—C7 | −178.4 (2) | N3—C15—C16—N4 | 15.8 (3) |
| C5—C6—C7—C2 | −0.4 (4) | C15—N3—C17—C18 | −69.4 (2) |
| C3—C2—C7—C6 | 1.1 (4) | C19—N3—C17—C18 | 50.5 (3) |
| C1—C2—C7—C6 | −179.2 (2) | C20—N4—C18—C17 | −68.8 (3) |
| O6—C8—C9—C10 | −2.6 (4) | C16—N4—C18—C17 | 51.1 (3) |
| O5—C8—C9—C10 | 177.5 (2) | N3—C17—C18—N4 | 15.8 (3) |
| O6—C8—C9—C14 | 179.2 (2) | C17—N3—C19—C20 | −68.8 (3) |
| O5—C8—C9—C14 | −0.7 (4) | C15—N3—C19—C20 | 50.6 (3) |
| C14—C9—C10—C11 | 0.1 (4) | C16—N4—C20—C19 | −68.9 (3) |
| C8—C9—C10—C11 | −178.1 (2) | C18—N4—C20—C19 | 50.5 (3) |
| C9—C10—C11—C12 | 0.0 (4) | N3—C19—C20—N4 | 15.6 (3) |
| C10—C11—C12—C13 | 0.0 (4) |
| H··· | ||||
| N3—H3 | 0.88 (2) | 1.66 (2) | 2.539 (3) | 173 (2) |
| N4—H4 | 0.89 (2) | 1.65 (2) | 2.542 (3) | 175 (3) |
| C15—H15 | 0.99 | 2.42 | 3.193 (3) | 134 |
| C16—H16 | 0.99 | 2.42 | 3.375 (3) | 161 |
| C17—H17 | 0.99 | 2.42 | 3.338 (3) | 153 |
| C17—H17 | 0.99 | 2.42 | 3.313 (3) | 149 |
| C20—H20 | 0.99 | 2.41 | 3.043 (3) | 121 |
| C20—H20 | 0.99 | 2.42 | 3.339 (3) | 154 |