Literature DB >> 24764876

1,4-Di-aza-bicyclo-[2.2.2]octane-1,4-diium bis-(3-chloro-benzoate).

Zi-Shuo Yao1, Osamu Sato1.   

Abstract

In the title salt C6H14N2 (2+)·2C7H4ClO2 (-), two 3-chloro-benzoate (3CBA) anions are bridged by one diprotonated 1,4-di-aza-bicyclo-[2.2.2]octane-1,4-diium (H2DABCO(2+)) dication through N-H⋯O hydrogen bonds. In this way, a trimeric unit is generated, in which the mean planes of the two 3CBA anions are twisted with respect to each other by a dihedral angle of 59.87 (9)°. The trimeric units are linked into a three-dimensional network via weak C-H⋯O inter-actions.

Entities:  

Year:  2014        PMID: 24764876      PMCID: PMC3998315          DOI: 10.1107/S1600536814000610

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related studies on co-crystals of DABCO and carb­oxy­lic acids, see: Arman et al. (2011 ▶); Skovsgaard & Bond (2009 ▶); Meehan et al. (1997 ▶); Rosli et al. (2006 ▶); Burchell et al. (2001 ▶).

Experimental

Crystal data

C6H14N2 2+·2C7H4ClO2 − M = 425.29 Triclinic, a = 7.332 (4) Å b = 10.512 (6) Å c = 13.517 (7) Å α = 79.74 (3)° β = 76.68 (2)° γ = 85.47 (2)° V = 996.8 (9) Å3 Z = 2 Mo Kα radiation μ = 0.36 mm−1 T = 123 K 0.08 × 0.07 × 0.06 mm

Data collection

Rigaku Saturn70 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2008 ▶) T min = 0.874, T max = 1.000 6989 measured reflections 3671 independent reflections 2777 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.097 S = 0.91 3671 reflections 253 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.33 e Å−3 Data collection: CrystalClear (Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814000610/jj2180sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814000610/jj2180Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814000610/jj2180Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C6H14N22+·2C7H4ClO2Z = 2
Mr = 425.29F(000) = 444
Triclinic, P1Dx = 1.417 Mg m3
a = 7.332 (4) ÅMo Kα radiation, λ = 0.71075 Å
b = 10.512 (6) ÅCell parameters from 3510 reflections
c = 13.517 (7) Åθ = 3.1–27.5°
α = 79.74 (3)°µ = 0.36 mm1
β = 76.68 (2)°T = 123 K
γ = 85.47 (2)°Block, colourless
V = 996.8 (9) Å30.08 × 0.07 × 0.06 mm
Rigaku Saturn70 diffractometer3671 independent reflections
Radiation source: Rotating Anode2777 reflections with I > 2σ(I)
Detector resolution: 28.5714 pixels mm-1Rint = 0.034
ω scansθmax = 25.5°, θmin = 3.1°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2008)h = −8→8
Tmin = 0.874, Tmax = 1.000k = −12→12
6989 measured reflectionsl = −16→16
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.097w = 1/[σ2(Fo2) + (0.0526P)2] where P = (Fo2 + 2Fc2)/3
S = 0.91(Δ/σ)max = 0.001
3671 reflectionsΔρmax = 0.40 e Å3
253 parametersΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.85741 (7)0.29946 (5)0.56505 (4)0.02963 (16)
Cl2−0.96963 (7)−0.46471 (5)0.18722 (4)0.03041 (16)
O10.33887 (19)0.09113 (13)0.42587 (10)0.0247 (3)
O20.26536 (19)0.24510 (13)0.30319 (11)0.0277 (3)
O3−0.40110 (18)−0.19373 (13)0.18759 (10)0.0209 (3)
O4−0.22174 (19)−0.15730 (15)0.02822 (10)0.0320 (4)
N1−0.1723 (2)−0.05291 (14)0.22871 (11)0.0163 (4)
H1N−0.2524−0.10420.21470.020*
N20.0517 (2)0.08989 (15)0.26718 (11)0.0170 (4)
H2N0.13170.14130.28120.020*
C10.4754 (2)0.29730 (18)0.39639 (13)0.0152 (4)
C20.4815 (3)0.42300 (18)0.34315 (14)0.0183 (4)
H20.39960.45060.29770.022*
C30.6052 (3)0.50894 (19)0.35524 (14)0.0204 (4)
H30.60920.59440.31750.024*
C40.7235 (3)0.46978 (19)0.42271 (14)0.0193 (4)
H40.81050.52730.43090.023*
C50.7124 (2)0.34535 (19)0.47776 (14)0.0178 (4)
C60.5904 (2)0.25831 (18)0.46641 (14)0.0168 (4)
H60.58480.17350.50540.020*
C70.3501 (2)0.20080 (18)0.37673 (14)0.0166 (4)
C8−0.4958 (3)−0.27845 (17)0.05760 (14)0.0165 (4)
C9−0.6506 (2)−0.33291 (17)0.12918 (14)0.0163 (4)
H9−0.6695−0.32490.19980.020*
C10−0.7755 (3)−0.39815 (18)0.09679 (15)0.0183 (4)
C11−0.7508 (3)−0.41311 (19)−0.00502 (15)0.0212 (4)
H11−0.8381−0.4587−0.02620.025*
C12−0.5961 (3)−0.36021 (18)−0.07544 (15)0.0213 (4)
H12−0.5769−0.3698−0.14570.026*
C13−0.4691 (3)−0.29346 (18)−0.04470 (14)0.0193 (4)
H13−0.3633−0.2579−0.09380.023*
C14−0.3593 (3)−0.20410 (18)0.09103 (14)0.0191 (4)
C15−0.1980 (3)0.08017 (18)0.17522 (15)0.0211 (4)
H15A−0.33080.11020.19500.025*
H15B−0.16530.08220.09970.025*
C16−0.0712 (3)0.16953 (18)0.20515 (15)0.0210 (4)
H16A0.00620.21890.14230.025*
H16B−0.14880.23190.24570.025*
C170.0218 (2)−0.10165 (19)0.19240 (15)0.0200 (4)
H17A0.0442−0.10820.11840.024*
H17B0.0414−0.18900.23120.024*
C180.1599 (3)−0.00838 (18)0.20868 (14)0.0188 (4)
H18A0.2499−0.05690.24740.023*
H18B0.23150.03440.14120.023*
C19−0.2115 (3)−0.05460 (19)0.34127 (14)0.0190 (4)
H19A−0.2063−0.14480.37770.023*
H19B−0.3385−0.01650.36490.023*
C20−0.0641 (3)0.02409 (18)0.36553 (14)0.0187 (4)
H20A−0.12700.08920.40810.022*
H20B0.0169−0.03400.40480.022*
U11U22U33U12U13U23
Cl10.0312 (3)0.0291 (3)0.0341 (3)−0.0036 (2)−0.0212 (2)−0.0007 (2)
Cl20.0256 (3)0.0346 (3)0.0307 (3)−0.0156 (2)−0.0003 (2)−0.0061 (2)
O10.0320 (8)0.0181 (8)0.0259 (8)−0.0076 (6)−0.0121 (6)0.0020 (6)
O20.0377 (9)0.0250 (8)0.0254 (8)−0.0111 (6)−0.0205 (7)0.0046 (6)
O30.0248 (8)0.0236 (8)0.0153 (7)−0.0077 (6)−0.0037 (6)−0.0042 (6)
O40.0295 (9)0.0475 (10)0.0191 (8)−0.0213 (7)−0.0021 (6)−0.0013 (7)
N10.0186 (9)0.0145 (8)0.0179 (8)−0.0035 (6)−0.0077 (7)−0.0025 (7)
N20.0176 (9)0.0171 (9)0.0181 (8)−0.0045 (7)−0.0074 (7)−0.0014 (7)
C10.0157 (10)0.0172 (10)0.0124 (9)−0.0011 (7)−0.0011 (7)−0.0040 (8)
C20.0199 (11)0.0226 (11)0.0123 (9)−0.0002 (8)−0.0043 (8)−0.0017 (8)
C30.0258 (11)0.0171 (10)0.0165 (10)−0.0039 (8)−0.0021 (8)0.0000 (8)
C40.0186 (10)0.0217 (11)0.0181 (10)−0.0062 (8)−0.0018 (8)−0.0047 (8)
C50.0159 (10)0.0228 (11)0.0160 (10)−0.0003 (8)−0.0058 (8)−0.0040 (8)
C60.0172 (10)0.0169 (10)0.0153 (9)−0.0014 (8)−0.0020 (7)−0.0018 (8)
C70.0156 (10)0.0203 (11)0.0139 (10)−0.0024 (8)−0.0022 (7)−0.0037 (8)
C80.0186 (10)0.0126 (10)0.0183 (10)0.0009 (7)−0.0055 (8)−0.0014 (8)
C90.0177 (10)0.0162 (10)0.0153 (10)0.0009 (8)−0.0030 (8)−0.0046 (8)
C100.0169 (10)0.0165 (10)0.0213 (10)−0.0013 (8)−0.0037 (8)−0.0028 (8)
C110.0228 (11)0.0194 (11)0.0262 (11)0.0000 (8)−0.0119 (9)−0.0080 (9)
C120.0272 (12)0.0227 (11)0.0158 (10)0.0016 (8)−0.0085 (8)−0.0042 (8)
C130.0221 (11)0.0194 (10)0.0151 (10)−0.0003 (8)−0.0042 (8)0.0008 (8)
C140.0199 (11)0.0170 (10)0.0206 (11)−0.0031 (8)−0.0064 (8)0.0003 (8)
C150.0228 (11)0.0183 (10)0.0232 (11)−0.0010 (8)−0.0108 (8)0.0016 (9)
C160.0253 (11)0.0171 (10)0.0218 (11)−0.0016 (8)−0.0103 (8)0.0009 (8)
C170.0153 (11)0.0236 (11)0.0217 (10)0.0019 (8)−0.0037 (8)−0.0068 (9)
C180.0165 (10)0.0212 (11)0.0184 (10)−0.0007 (8)−0.0029 (8)−0.0034 (8)
C190.0203 (11)0.0216 (11)0.0145 (10)−0.0040 (8)−0.0022 (8)−0.0017 (8)
C200.0225 (11)0.0203 (10)0.0135 (10)−0.0023 (8)−0.0040 (8)−0.0020 (8)
Cl1—C51.747 (2)C8—C91.397 (3)
Cl2—C101.749 (2)C8—C141.508 (3)
O1—C71.222 (2)C9—C101.375 (2)
O2—C71.290 (2)C9—H90.9500
O3—C141.292 (2)C10—C111.382 (3)
O4—C141.231 (2)C11—C121.384 (3)
N1—C151.475 (2)C11—H110.9500
N1—C191.479 (2)C12—C131.385 (2)
N1—C171.478 (2)C12—H120.9500
N1—H1N0.9000C13—H130.9500
N2—C181.481 (2)C15—C161.536 (3)
N2—C161.481 (2)C15—H15A0.9900
N2—C201.487 (2)C15—H15B0.9900
N2—H2N0.9000C16—H16A0.9900
C1—C21.386 (3)C16—H16B0.9900
C1—C61.396 (3)C17—C181.540 (2)
C1—C71.516 (2)C17—H17A0.9900
C2—C31.384 (3)C17—H17B0.9900
C2—H20.9500C18—H18A0.9900
C3—C41.388 (3)C18—H18B0.9900
C3—H30.9500C19—C201.537 (2)
C4—C51.383 (3)C19—H19A0.9900
C4—H40.9500C19—H19B0.9900
C5—C61.379 (3)C20—H20A0.9900
C6—H60.9500C20—H20B0.9900
C8—C131.387 (3)
C15—N1—C19109.80 (15)C13—C12—C11120.80 (18)
C15—N1—C17109.77 (15)C13—C12—H12119.6
C19—N1—C17109.86 (14)C11—C12—H12119.6
C15—N1—H1N109.2C12—C13—C8120.19 (18)
C19—N1—H1N109.2C12—C13—H13119.9
C17—N1—H1N109.1C8—C13—H13119.9
C18—N2—C16109.80 (14)O4—C14—O3124.69 (17)
C18—N2—C20109.46 (15)O4—C14—C8120.50 (17)
C16—N2—C20109.79 (15)O3—C14—C8114.81 (16)
C18—N2—H2N109.3N1—C15—C16109.14 (15)
C16—N2—H2N109.3N1—C15—H15A109.9
C20—N2—H2N109.2C16—C15—H15A109.9
C2—C1—C6119.49 (17)N1—C15—H15B109.9
C2—C1—C7120.69 (17)C16—C15—H15B109.9
C6—C1—C7119.79 (17)H15A—C15—H15B108.3
C3—C2—C1121.01 (18)N2—C16—C15108.98 (15)
C3—C2—H2119.5N2—C16—H16A109.9
C1—C2—H2119.5C15—C16—H16A109.9
C2—C3—C4119.77 (18)N2—C16—H16B109.9
C2—C3—H3120.1C15—C16—H16B109.9
C4—C3—H3120.1H16A—C16—H16B108.3
C5—C4—C3118.74 (18)N1—C17—C18109.31 (15)
C5—C4—H4120.6N1—C17—H17A109.8
C3—C4—H4120.6C18—C17—H17A109.8
C6—C5—C4122.26 (18)N1—C17—H17B109.8
C6—C5—Cl1119.69 (15)C18—C17—H17B109.8
C4—C5—Cl1118.05 (14)H17A—C17—H17B108.3
C5—C6—C1118.67 (18)N2—C18—C17108.61 (14)
C5—C6—H6120.7N2—C18—H18A110.0
C1—C6—H6120.7C17—C18—H18A110.0
O1—C7—O2125.20 (17)N2—C18—H18B110.0
O1—C7—C1121.13 (17)C17—C18—H18B110.0
O2—C7—C1113.64 (17)H18A—C18—H18B108.3
C13—C8—C9119.23 (17)N1—C19—C20108.85 (14)
C13—C8—C14120.32 (17)N1—C19—H19A109.9
C9—C8—C14120.45 (16)C20—C19—H19A109.9
C10—C9—C8119.57 (17)N1—C19—H19B109.9
C10—C9—H9120.2C20—C19—H19B109.9
C8—C9—H9120.2H19A—C19—H19B108.3
C9—C10—C11121.69 (18)N2—C20—C19109.05 (14)
C9—C10—Cl2119.01 (15)N2—C20—H20A109.9
C11—C10—Cl2119.29 (14)C19—C20—H20A109.9
C10—C11—C12118.52 (17)N2—C20—H20B109.9
C10—C11—H11120.7C19—C20—H20B109.9
C12—C11—H11120.7H20A—C20—H20B108.3
C6—C1—C2—C32.6 (3)C9—C8—C13—C120.9 (3)
C7—C1—C2—C3−175.35 (16)C14—C8—C13—C12−179.08 (17)
C1—C2—C3—C4−0.9 (3)C13—C8—C14—O4−0.8 (3)
C2—C3—C4—C5−1.0 (3)C9—C8—C14—O4179.18 (18)
C3—C4—C5—C61.3 (3)C13—C8—C14—O3178.35 (17)
C3—C4—C5—Cl1−178.13 (14)C9—C8—C14—O3−1.6 (3)
C4—C5—C6—C10.4 (3)C19—N1—C15—C1656.50 (19)
Cl1—C5—C6—C1179.80 (13)C17—N1—C15—C16−64.36 (19)
C2—C1—C6—C5−2.3 (3)C18—N2—C16—C1556.32 (19)
C7—C1—C6—C5175.65 (15)C20—N2—C16—C15−64.07 (18)
C2—C1—C7—O1−177.41 (18)N1—C15—C16—N27.0 (2)
C6—C1—C7—O14.6 (3)C15—N1—C17—C1856.14 (19)
C2—C1—C7—O24.5 (2)C19—N1—C17—C18−64.69 (19)
C6—C1—C7—O2−173.43 (16)C16—N2—C18—C17−64.37 (19)
C13—C8—C9—C10−1.3 (3)C20—N2—C18—C1756.22 (19)
C14—C8—C9—C10178.71 (17)N1—C17—C18—N27.0 (2)
C8—C9—C10—C110.9 (3)C15—N1—C19—C20−65.01 (18)
C8—C9—C10—Cl2−179.50 (14)C17—N1—C19—C2055.80 (19)
C9—C10—C11—C12−0.2 (3)C18—N2—C20—C19−65.10 (19)
Cl2—C10—C11—C12−179.78 (15)C16—N2—C20—C1955.49 (19)
C10—C11—C12—C13−0.2 (3)N1—C19—C20—N27.6 (2)
C11—C12—C13—C8−0.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O30.901.642.536 (2)178
N2—H2N···O20.901.632.528 (3)175
C3—H3···O3i0.952.593.523 (3)169
C18—H18B···O4ii0.992.433.311 (3)147
C19—H19B···O1iii0.992.563.552 (3)178
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O30.901.642.536 (2)178
N2—H2N⋯O20.901.632.528 (3)175
C3—H3⋯O3i 0.952.593.523 (3)169
C18—H18B⋯O4ii 0.992.433.311 (3)147
C19—H19B⋯O1iii 0.992.563.552 (3)178

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Salts of 3,5-dinitrobenzoic acid with organic diamines: hydrogen-bonded supramolecular structures in one, two and three dimensions.

Authors:  C J Burchell; C Glidewell; A J Lough; G Ferguson
Journal:  Acta Crystallogr B       Date:  2001-04

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  4-Aza-1-azoniabicyclo-[2.2.2]octa-ne-2-amino-benzoate-2-amino-benzoic acid (1/1/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-12
  3 in total

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