Literature DB >> 29877477

Measure and model a 3-D space-variant PSF for fluorescence microscopy image deblurring.

Yemeng Chen, Mengmeng Chen, Li Zhu, Jane Y Wu, Sidan Du, Yang Li.   

Abstract

Conventional deconvolution methods assume that the microscopy system is spatially invariant, introducing considerable errors. We developed a method to more precisely estimate space-variant point-spread functions from sparse measurements. To this end, a space-variant version of deblurring algorithm was developed and combined with a total-variation regularization. Validation with both simulation and real data showed that our PSF model is more accurate than the piecewise-invariant model and the blending model. Comparing with the orthogonal basis decomposition based PSF model, our proposed model also performed with a considerable improvement. We also evaluated the proposed deblurring algorithm. Our new deblurring algorithm showed a significantly better signal-to-noise ratio and higher image quality than those of the conventional space-invariant algorithm.

Entities:  

Year:  2018        PMID: 29877477      PMCID: PMC6005672          DOI: 10.1364/OE.26.014375

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  30 in total

1.  Background estimation in nonlinear image restoration.

Authors:  G M van Kempen; L J van Vliet
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2000-03       Impact factor: 2.129

2.  The influence of the regularization parameter and the first estimate on the performance of tikhonov regularized non-linear image restoration algorithms

Authors: 
Journal:  J Microsc       Date:  2000-04       Impact factor: 1.758

3.  Image restoration for three-dimensional fluorescence microscopy using an orthonormal basis for efficient representation of depth-variant point-spread functions.

Authors:  Nurmohammed Patwary; Chrysanthe Preza
Journal:  Biomed Opt Express       Date:  2015-09-08       Impact factor: 3.732

4.  Resolution enhancement in a light-sheet-based microscope (SPIM).

Authors:  Christoph J Engelbrecht; Ernst H Stelzer
Journal:  Opt Lett       Date:  2006-05-15       Impact factor: 3.776

5.  Enhanced three-dimensional deconvolution microscopy using a measured depth-varying point-spread function.

Authors:  Joshua W Shaevitz; Daniel A Fletcher
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2007-09       Impact factor: 2.129

6.  [The parameter estimation method of Gaussian point spread function in microscopic images].

Authors:  Zhaoxue Chen; Hao Chen
Journal:  Sheng Wu Yi Xue Gong Cheng Xue Za Zhi       Date:  2014-02

7.  Maximum a posteriori estimation with Good's roughness for three-dimensional optical-sectioning microscopy.

Authors:  S Joshi; M I Miller
Journal:  J Opt Soc Am A       Date:  1993-05       Impact factor: 2.129

8.  Accelerated edge-preserving image restoration without boundary artifacts.

Authors:  Antonios Matakos; Sathish Ramani; Jeffrey A Fessler
Journal:  IEEE Trans Image Process       Date:  2013-01-30       Impact factor: 10.856

9.  Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy.

Authors:  Yicong Wu; Peter Wawrzusin; Justin Senseney; Robert S Fischer; Ryan Christensen; Anthony Santella; Andrew G York; Peter W Winter; Clare M Waterman; Zhirong Bao; Daniel A Colón-Ramos; Matthew McAuliffe; Hari Shroff
Journal:  Nat Biotechnol       Date:  2013-10-13       Impact factor: 54.908

10.  Fast and high-accuracy localization for three-dimensional single-particle tracking.

Authors:  Shu-Lin Liu; Jicun Li; Zhi-Ling Zhang; Zhi-Gang Wang; Zhi-Quan Tian; Guo-Ping Wang; Dai-Wen Pang
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

View more
  3 in total

1.  Deconvolution of light sheet microscopy recordings.

Authors:  Klaus Becker; Saiedeh Saghafi; Marko Pende; Inna Sabdyusheva-Litschauer; Christian M Hahn; Massih Foroughipour; Nina Jährling; Hans-Ulrich Dodt
Journal:  Sci Rep       Date:  2019-11-26       Impact factor: 4.379

Review 2.  Development of Planar Illumination Strategies for Solving Mysteries in the Sub-Cellular Realm.

Authors:  Tanveer Teranikar; Jessica Lim; Toluwani Ijaseun; Juhyun Lee
Journal:  Int J Mol Sci       Date:  2022-01-31       Impact factor: 5.923

3.  3D test sample for the calibration and quality control of stimulated emission depletion (STED) and confocal microscopes.

Authors:  Ernest B van der Wee; Jantina Fokkema; Chris L Kennedy; Marc Del Pozo; D A Matthijs de Winter; Peter N A Speets; Hans C Gerritsen; Alfons van Blaaderen
Journal:  Commun Biol       Date:  2021-07-23
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.