Literature DB >> 24747812

Efficient Bayesian-based multiview deconvolution.

Stephan Preibisch1, Fernando Amat2, Evangelia Stamataki3, Mihail Sarov3, Robert H Singer4, Eugene Myers5, Pavel Tomancak3.   

Abstract

Light-sheet fluorescence microscopy is able to image large specimens with high resolution by capturing the samples from multiple angles. Multiview deconvolution can substantially improve the resolution and contrast of the images, but its application has been limited owing to the large size of the data sets. Here we present a Bayesian-based derivation of multiview deconvolution that drastically improves the convergence time, and we provide a fast implementation using graphics hardware.

Entities:  

Mesh：

Year:  2014        PMID： 24747812      PMCID： PMC4153441          DOI： 10.1038/nmeth.2929

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  15 in total

1.  Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors:  Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2004-08-13       Impact factor: 47.728

2.  Software for bead-based registration of selective plane illumination microscopy data.

Authors:  Stephan Preibisch; Stephan Saalfeld; Johannes Schindelin; Pavel Tomancak
Journal:  Nat Methods       Date:  2010-06       Impact factor: 28.547

3.  High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy.

Authors:  Peter J Verveer; Jim Swoger; Francesco Pampaloni; Klaus Greger; Marco Marcello; Ernst H K Stelzer
Journal:  Nat Methods       Date:  2007-03-04       Impact factor: 28.547

4.  Accelerated image reconstruction using ordered subsets of projection data.

Authors:  H M Hudson; R S Larkin
Journal:  IEEE Trans Med Imaging       Date:  1994       Impact factor: 10.048

5.  Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy.

Authors:  Philipp J Keller; Annette D Schmidt; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2008-10-09       Impact factor: 47.728

6.  Deep and fast live imaging with two-photon scanned light-sheet microscopy.

Authors:  Thai V Truong; Willy Supatto; David S Koos; John M Choi; Scott E Fraser
Journal:  Nat Methods       Date:  2011-07-17       Impact factor: 28.547

7.  Fiji: an open-source platform for biological-image analysis.

Authors:  Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

8.  OpenSPIM: an open-access light-sheet microscopy platform.

Authors:  Peter G Pitrone; Johannes Schindelin; Luke Stuyvenberg; Stephan Preibisch; Michael Weber; Kevin W Eliceiri; Jan Huisken; Pavel Tomancak
Journal:  Nat Methods       Date:  2013-06-09       Impact factor: 28.547

9.  A 3D digital atlas of C. elegans and its application to single-cell analyses.

Authors:  Fuhui Long; Hanchuan Peng; Xiao Liu; Stuart K Kim; Eugene Myers
Journal:  Nat Methods       Date:  2009-08-16       Impact factor: 28.547

10.  Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy.

Authors:  Philipp J Keller; Annette D Schmidt; Anthony Santella; Khaled Khairy; Zhirong Bao; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Nat Methods       Date:  2010-07-04       Impact factor: 28.547
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  65 in total

1.  Whole-animal functional and developmental imaging with isotropic spatial resolution.

Authors:  Raghav K Chhetri; Fernando Amat; Yinan Wan; Burkhard Höckendorf; William C Lemon; Philipp J Keller
Journal:  Nat Methods       Date:  2015-10-26       Impact factor: 28.547

2.  Light-sheet fluorescence microscopy for quantitative biology.

Authors:  Ernst H K Stelzer
Journal:  Nat Methods       Date:  2015-01       Impact factor: 28.547

3.  Preparation of plants for developmental and cellular imaging by light-sheet microscopy.

Authors:  Miroslav Ovečka; Lenka Vaškebová; George Komis; Ivan Luptovčiak; Andrei Smertenko; Jozef Šamaj
Journal:  Nat Protoc       Date:  2015-07-23       Impact factor: 13.491

4.  BioCell2XML: a novel tool for converting cell lineage data from SIMI BioCell to MaMuT (Fiji).

Authors:  Markus Pennerstorfer; Günther Loose; Carsten Wolff
Journal:  Dev Genes Evol       Date:  2019-05-22       Impact factor: 0.900

5.  Effector and stem-like memory cell fates are imprinted in distinct lymph node niches directed by CXCR3 ligands.

Authors:  Brigette C Duckworth; Fanny Lafouresse; Verena C Wimmer; Benjamin J Broomfield; Lennard Dalit; Yannick O Alexandre; Amania A Sheikh; Raymond Z Qin; Carolina Alvarado; Lisa A Mielke; Marc Pellegrini; Scott N Mueller; Thomas Boudier; Kelly L Rogers; Joanna R Groom
Journal:  Nat Immunol       Date:  2021-03-01       Impact factor: 25.606

6.  Quantifying three-dimensional rodent retina vascular development using optical tissue clearing and light-sheet microscopy.

Authors:  Jasmine N Singh; Taylor M Nowlin; Gregory J Seedorf; Steven H Abman; Douglas P Shepherd
Journal:  J Biomed Opt       Date:  2017-07-01       Impact factor: 3.170

Review 7.  Deciphering tissue morphodynamics using bioimage informatics.

Authors:  Alexandre C Dufour; Anneliene H Jonker; Jean-Christophe Olivo-Marin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-05-19       Impact factor: 6.237

8.  Improving your four-dimensional image: traveling through a decade of light-sheet-based fluorescence microscopy research.

Authors:  Frederic Strobl; Alexander Schmitz; Ernst H K Stelzer
Journal:  Nat Protoc       Date:  2017-05-04       Impact factor: 13.491

9.  Dual-view photoacoustic microscopy for quantitative cell nuclear imaging.

Authors:  Terence T W Wong; Liren Zhu; Junhui Shi; Sung-Liang Chen; Lihong V Wang
Journal:  Opt Lett       Date:  2018-10-15       Impact factor: 3.776

10.  Light Sheet-based Fluorescence Microscopy of Living or Fixed and Stained Tribolium castaneum Embryos.

Authors:  Frederic Strobl; Selina Klees; Ernst H K Stelzer
Journal:  J Vis Exp       Date:  2017-04-28       Impact factor: 1.355
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