Literature DB >> 22155179

Structural analyses clarify the complex control of mistranslation by tRNA synthetases.

Min Guo1, Paul Schimmel.   

Abstract

Proteins are precisely assembled with amino acids by matching the anticodons of charged transfer RNAs to nucleotide triplets in mRNA sequences. Accurate translation depends on the specific coupling of cognate amino acids and tRNAs - a step carried out by aminoacyl-tRNA synthetases (aaRSs) and that generates the genetic code. Owing to their intrinsic similarity, aaRSs developed highly differentiated structures to discriminate between amino acids at the active site for aminoacylation. Because this discrimination is not sufficient to prevent toxic mistranslation, aaRSs developed separate structures to further refine recognition by proofreading. From comprehensive structural studies on aaRSs, many of the molecular details have been elucidated for the recognition of cognate amino acids and for the misactivation and editing of noncognate amino acids, Here we review recent advances in the structural description of the binding, activation and editing of amino acids, which collectively reveal many aspects of the fine-tuned systems that resulted in a robust and universal genetic code. Copyright Â
© 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22155179      PMCID: PMC3288634          DOI: 10.1016/j.sbi.2011.11.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  63 in total

1.  Mechanistic insights into cognate substrate discrimination during proofreading in translation.

Authors:  Tanweer Hussain; Venu Kamarthapu; Shobha P Kruparani; Mandar V Deshmukh; Rajan Sankaranarayanan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-22       Impact factor: 11.205

2.  p23H implicated as cis/trans regulator of AlaXp-directed editing for mammalian cell homeostasis.

Authors:  Mir Hussain Nawaz; Eve Merriman; Xiang-Lei Yang; Paul Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-01       Impact factor: 11.205

3.  The C-Ala domain brings together editing and aminoacylation functions on one tRNA.

Authors:  Min Guo; Yeeting E Chong; Kirk Beebe; Ryan Shapiro; Xiang-Lei Yang; Paul Schimmel
Journal:  Science       Date:  2009-08-07       Impact factor: 47.728

4.  Misacylation of specific nonmethionyl tRNAs by a bacterial methionyl-tRNA synthetase.

Authors:  Thomas E Jones; Rebecca W Alexander; Tao Pan
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

5.  Structure of human cytosolic phenylalanyl-tRNA synthetase: evidence for kingdom-specific design of the active sites and tRNA binding patterns.

Authors:  Igal Finarov; Nina Moor; Naama Kessler; Liron Klipcan; Mark G Safro
Journal:  Structure       Date:  2010-03-10       Impact factor: 5.006

6.  Idiosyncrasy and identity in the prokaryotic Phe-system: crystal structure of E. coli phenylalanyl-tRNA synthetase complexed with phenylalanine and AMP.

Authors:  Inbal Mermershtain; Igal Finarov; Liron Klipcan; Naama Kessler; Haim Rozenberg; Mark G Safro
Journal:  Protein Sci       Date:  2011-01       Impact factor: 6.725

7.  Cell-specific differences in the requirements for translation quality control.

Authors:  Noah M Reynolds; Jiqiang Ling; Hervé Roy; Rajat Banerjee; Sarah E Repasky; Patrice Hamel; Michael Ibba
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-16       Impact factor: 11.205

8.  Eukaryotic cytosolic and mitochondrial phenylalanyl-tRNA synthetases catalyze the charging of tRNA with the meta-tyrosine.

Authors:  Liron Klipcan; Nina Moor; Naama Kessler; Mark G Safro
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-22       Impact factor: 11.205

9.  Severe oxidative stress induces protein mistranslation through impairment of an aminoacyl-tRNA synthetase editing site.

Authors:  Jiqiang Ling; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-16       Impact factor: 11.205

10.  Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma.

Authors:  Min Guo; Yeeting E Chong; Ryan Shapiro; Kirk Beebe; Xiang-Lei Yang; Paul Schimmel
Journal:  Nature       Date:  2009-12-10       Impact factor: 49.962

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  18 in total

1.  The mechanism of pre-transfer editing in yeast mitochondrial threonyl-tRNA synthetase.

Authors:  Jiqiang Ling; Kaitlyn M Peterson; Ivana Simonovic; Dieter Söll; Miljan Simonovic
Journal:  J Biol Chem       Date:  2012-07-06       Impact factor: 5.157

Review 2.  Bacterial transfer RNAs.

Authors:  Jennifer Shepherd; Michael Ibba
Journal:  FEMS Microbiol Rev       Date:  2015-03-21       Impact factor: 16.408

Review 3.  The ribosome challenge to the RNA world.

Authors:  Jessica C Bowman; Nicholas V Hud; Loren Dean Williams
Journal:  J Mol Evol       Date:  2015-03-05       Impact factor: 2.395

Review 4.  Emergence and evolution.

Authors:  Tammy J Bullwinkle; Michael Ibba
Journal:  Top Curr Chem       Date:  2014

Review 5.  Translational fidelity and mistranslation in the cellular response to stress.

Authors:  Kyle Mohler; Michael Ibba
Journal:  Nat Microbiol       Date:  2017-08-24       Impact factor: 17.745

Review 6.  Chiral checkpoints during protein biosynthesis.

Authors:  Santosh Kumar Kuncha; Shobha P Kruparani; Rajan Sankaranarayanan
Journal:  J Biol Chem       Date:  2019-10-07       Impact factor: 5.157

Review 7.  Adaptive translation as a mechanism of stress response and adaptation.

Authors:  Tao Pan
Journal:  Annu Rev Genet       Date:  2013-08-28       Impact factor: 16.830

Review 8.  Regulation of mRNA Translation in Neurons-A Matter of Life and Death.

Authors:  Mridu Kapur; Caitlin E Monaghan; Susan L Ackerman
Journal:  Neuron       Date:  2017-11-01       Impact factor: 17.173

9.  Biochemical and structural characterization of mycobacterial aspartyl-tRNA synthetase AspS, a promising TB drug target.

Authors:  Sudagar S Gurcha; Veeraraghavan Usha; Jonathan A G Cox; Klaus Fütterer; Katherine A Abrahams; Apoorva Bhatt; Luke J Alderwick; Robert C Reynolds; Nicholas J Loman; VijayaShankar Nataraj; Carlos Alemparte; David Barros; Adrian J Lloyd; Lluis Ballell; Judith V Hobrath; Gurdyal S Besra
Journal:  PLoS One       Date:  2014-11-19       Impact factor: 3.240

Review 10.  Transfer RNA and human disease.

Authors:  Jamie A Abbott; Christopher S Francklyn; Susan M Robey-Bond
Journal:  Front Genet       Date:  2014-06-03       Impact factor: 4.599

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