Literature DB >> 23478877

Emergence and evolution.

Tammy J Bullwinkle1, Michael Ibba.   

Abstract

The aminoacyl-tRNA synthetases (aaRSs) are essential components of the protein synthesis machinery responsible for defining the genetic code by pairing the correct amino acids to their cognate tRNAs. The aaRSs are an ancient enzyme family believed to have origins that may predate the last common ancestor and as such they provide insights into the evolution and development of the extant genetic code. Although the aaRSs have long been viewed as a highly conserved group of enzymes, findings within the last couple of decades have started to demonstrate how diverse and versatile these enzymes really are. Beyond their central role in translation, aaRSs and their numerous homologs have evolved a wide array of alternative functions both inside and outside translation. Current understanding of the emergence of the aaRSs, and their subsequent evolution into a functionally diverse enzyme family, are discussed in this chapter.

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Year:  2014        PMID: 23478877      PMCID: PMC3883804          DOI: 10.1007/128_2013_423

Source DB:  PubMed          Journal:  Top Curr Chem        ISSN: 0340-1022


  311 in total

1.  Structural basis of the water-assisted asparagine recognition by asparaginyl-tRNA synthetase.

Authors:  Wataru Iwasaki; Shun-ichi Sekine; Chizu Kuroishi; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Journal:  J Mol Biol       Date:  2006-05-15       Impact factor: 5.469

2.  Distinct kinetic mechanisms of the two classes of Aminoacyl-tRNA synthetases.

Authors:  Chun-Mei Zhang; John J Perona; Kang Ryu; Christopher Francklyn; Ya-Ming Hou
Journal:  J Mol Biol       Date:  2006-06-27       Impact factor: 5.469

3.  Editing-defective tRNA synthetase causes protein misfolding and neurodegeneration.

Authors:  Jeong Woong Lee; Kirk Beebe; Leslie A Nangle; Jaeseon Jang; Chantal M Longo-Guess; Susan A Cook; Muriel T Davisson; John P Sundberg; Paul Schimmel; Susan L Ackerman
Journal:  Nature       Date:  2006-08-13       Impact factor: 49.962

4.  The crystal structure of the ternary complex of phenylalanyl-tRNA synthetase with tRNAPhe and a phenylalanyl-adenylate analogue reveals a conformational switch of the CCA end.

Authors:  Nina Moor; Olga Kotik-Kogan; Dmitry Tworowski; Maria Sukhanova; Mark Safro
Journal:  Biochemistry       Date:  2006-09-05       Impact factor: 3.162

5.  Crystal structure of a non-discriminating glutamyl-tRNA synthetase.

Authors:  Jörg O Schulze; Ava Masoumi; Daniel Nickel; Martina Jahn; Dieter Jahn; Wolf-Dieter Schubert; Dirk W Heinz
Journal:  J Mol Biol       Date:  2006-07-05       Impact factor: 5.469

6.  Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707.

Authors:  Martin G Klotz; Daniel J Arp; Patrick S G Chain; Amal F El-Sheikh; Loren J Hauser; Norman G Hommes; Frank W Larimer; Stephanie A Malfatti; Jeanette M Norton; Amisha T Poret-Peterson; Lisa M Vergez; Bess B Ward
Journal:  Appl Environ Microbiol       Date:  2006-09       Impact factor: 4.792

7.  Post-transfer editing mechanism of a D-aminoacyl-tRNA deacylase-like domain in threonyl-tRNA synthetase from archaea.

Authors:  Tanweer Hussain; Shobha P Kruparani; Biswajit Pal; Anne-Catherine Dock-Bregeon; Shweta Dwivedi; Megala R Shekar; Kotini Sureshbabu; Rajan Sankaranarayanan
Journal:  EMBO J       Date:  2006-08-10       Impact factor: 11.598

8.  Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase.

Authors:  Hiroshi M Sasaki; Shun-ichi Sekine; Toru Sengoku; Ryuya Fukunaga; Motoyuki Hattori; Yukiko Utsunomiya; Chizu Kuroishi; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-26       Impact factor: 11.205

9.  Identification in archaea of a novel D-Tyr-tRNATyr deacylase.

Authors:  Maria-Laura Ferri-Fioni; Michel Fromant; Anne-Pascale Bouin; Caroline Aubard; Christine Lazennec; Pierre Plateau; Sylvain Blanquet
Journal:  J Biol Chem       Date:  2006-07-13       Impact factor: 5.157

10.  Thermodynamic properties distinguish human mitochondrial aspartyl-tRNA synthetase from bacterial homolog with same 3D architecture.

Authors:  Anne Neuenfeldt; Bernard Lorber; Eric Ennifar; Agnès Gaudry; Claude Sauter; Marie Sissler; Catherine Florentz
Journal:  Nucleic Acids Res       Date:  2012-12-28       Impact factor: 16.971

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  12 in total

Review 1.  The Evolution of Substrate Specificity by tRNA Modification Enzymes.

Authors:  Katherine M McKenney; Mary Anne T Rubio; Juan D Alfonzo
Journal:  Enzymes       Date:  2017-04-26

2.  Glutaminyl-tRNA Synthetase from Pseudomonas aeruginosa: Characterization, structure, and development as a screening platform.

Authors:  Yaritza Escamilla; Casey A Hughes; Jan Abendroth; David M Dranow; Samantha Balboa; Frank B Dean; James M Bullard
Journal:  Protein Sci       Date:  2019-12-24       Impact factor: 6.725

3.  Specificity and catalysis hardwired at the RNA-protein interface in a translational proofreading enzyme.

Authors:  Sadeem Ahmad; Sowndarya Muthukumar; Santosh Kumar Kuncha; Satya Brata Routh; Antony S K Yerabham; Tanweer Hussain; Venu Kamarthapu; Shobha P Kruparani; Rajan Sankaranarayanan
Journal:  Nat Commun       Date:  2015-06-26       Impact factor: 14.919

4.  Molecular evolution of protein-RNA mimicry as a mechanism for translational control.

Authors:  Assaf Katz; Lindsey Solden; S Betty Zou; William Wiley Navarre; Michael Ibba
Journal:  Nucleic Acids Res       Date:  2013-12-13       Impact factor: 16.971

5.  Insights into substrate promiscuity of human seryl-tRNA synthetase.

Authors:  Kaitlyn M Holman; Anupama K Puppala; Jonathan W Lee; Hyun Lee; Miljan Simonović
Journal:  RNA       Date:  2017-08-14       Impact factor: 4.942

6.  MiSynPat: An integrated knowledge base linking clinical, genetic, and structural data for disease-causing mutations in human mitochondrial aminoacyl-tRNA synthetases.

Authors:  Luc Moulinier; Raymond Ripp; Gaston Castillo; Olivier Poch; Marie Sissler
Journal:  Hum Mutat       Date:  2017-06-27       Impact factor: 4.878

7.  Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions.

Authors:  Shuang Li; Zhaoming Su; Jean Lehmann; Vassiliki Stamatopoulou; Nikoleta Giarimoglou; Frances E Henderson; Lixin Fan; Grigore D Pintilie; Kaiming Zhang; Muyuan Chen; Steven J Ludtke; Yun-Xing Wang; Constantinos Stathopoulos; Wah Chiu; Jinwei Zhang
Journal:  Nat Struct Mol Biol       Date:  2019-11-18       Impact factor: 15.369

Review 8.  Constructive Neutral Evolution 20 Years Later.

Authors:  Jeremy G Wideman; Kerry Geiler-Samerotte; Sergio A Muñoz-Gómez; Gaurav Bilolikar
Journal:  J Mol Evol       Date:  2021-02-19       Impact factor: 2.395

Review 9.  Novel phenotype and genotype spectrum of NARS2 and literature review of previous mutations.

Authors:  Mohammad Vafaee-Shahi; Mohammad Farhadi; Ehsan Razmara; Saeid Morovvati; Saeide Ghasemi; Seyedeh Sedigheh Abedini; Zohreh Bagher; Rafieh Alizadeh; Masoumeh Falah
Journal:  Ir J Med Sci       Date:  2021-08-10       Impact factor: 2.089

10.  Correlation between equi-partition of aminoacyl-tRNA synthetases and amino-acid biosynthesis pathways.

Authors:  Akio Takénaka; Dino Moras
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

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