Literature DB >> 23988117

Adaptive translation as a mechanism of stress response and adaptation.

Tao Pan1.   

Abstract

The composition of the cellular proteome is commonly thought to strictly adhere to the genetic code. However, accumulating evidence indicates that cells also regulate the synthesis of mutant protein molecules that deviate from the genetic code. Production of mutant proteins generally occurs when cells are stressed or when they undergo environmental adaptation, but production varies in amounts and specificity. The deliberate synthesis of mutant proteins suggests that some of these proteins can be useful in cellular stress response and adaptation. This review describes the occurrence of, the translation mechanisms for, and the functional hypotheses on regulated synthesis of mutant proteins.

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Year:  2013        PMID: 23988117      PMCID: PMC4109725          DOI: 10.1146/annurev-genet-111212-133522

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  78 in total

Review 1.  Quality control of mRNA decoding on the bacterial ribosome.

Authors:  Marina V Rodnina
Journal:  Adv Protein Chem Struct Biol       Date:  2012       Impact factor: 3.507

2.  Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons.

Authors:  Marc Parisien; Chengqi Yi; Tao Pan
Journal:  RNA       Date:  2012-01-26       Impact factor: 4.942

3.  Misacylation of specific nonmethionyl tRNAs by a bacterial methionyl-tRNA synthetase.

Authors:  Thomas E Jones; Rebecca W Alexander; Tao Pan
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

4.  RNA binding targets aminoacyl-tRNA synthetases to translating ribosomes.

Authors:  Alexandre David; Nir Netzer; Michael Brad Strader; Suman R Das; Cai Yun Chen; James Gibbs; Philippe Pierre; Jack R Bennink; Jonathan W Yewdell
Journal:  J Biol Chem       Date:  2011-04-01       Impact factor: 5.157

5.  Naturally occurring aminoacyl-tRNA synthetases editing-domain mutations that cause mistranslation in Mycoplasma parasites.

Authors:  Li Li; Michal T Boniecki; Jacob D Jaffe; Brian S Imai; Peter M Yau; Zaida A Luthey-Schulten; Susan A Martinis
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

6.  Dual role of methionyl-tRNA synthetase in the regulation of translation and tumor suppressor activity of aminoacyl-tRNA synthetase-interacting multifunctional protein-3.

Authors:  Nam Hoon Kwon; Taehee Kang; Jin Young Lee; Hyo Hyun Kim; Hye Rim Kim; Jeena Hong; Young Sun Oh; Jung Min Han; Min Jeong Ku; Sang Yeol Lee; Sunghoon Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-21       Impact factor: 11.205

Review 7.  Structural analyses clarify the complex control of mistranslation by tRNA synthetases.

Authors:  Min Guo; Paul Schimmel
Journal:  Curr Opin Struct Biol       Date:  2011-12-10       Impact factor: 6.809

8.  A yeast prion, Mod5, promotes acquired drug resistance and cell survival under environmental stress.

Authors:  Genjiro Suzuki; Naoyuki Shimazu; Motomasa Tanaka
Journal:  Science       Date:  2012-04-20       Impact factor: 47.728

9.  Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes.

Authors:  Nicholas T Ingolia; Liana F Lareau; Jonathan S Weissman
Journal:  Cell       Date:  2011-11-03       Impact factor: 41.582

10.  Converting nonsense codons into sense codons by targeted pseudouridylation.

Authors:  John Karijolich; Yi-Tao Yu
Journal:  Nature       Date:  2011-06-15       Impact factor: 49.962

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  51 in total

1.  Ancestral AlaX editing enzymes for control of genetic code fidelity are not tRNA-specific.

Authors:  Eva Maria Novoa; Oscar Vargas-Rodriguez; Stefanie Lange; Yuki Goto; Hiroaki Suga; Karin Musier-Forsyth; Lluís Ribas de Pouplana
Journal:  J Biol Chem       Date:  2015-02-27       Impact factor: 5.157

2.  Myt Transcription Factors Prevent Stress-Response Gene Overactivation to Enable Postnatal Pancreatic β Cell Proliferation, Function, and Survival.

Authors:  Ruiying Hu; Emily Walker; Chen Huang; Yanwen Xu; Chen Weng; Gillian E Erickson; Anastasia Coldren; Xiaodun Yang; Marcela Brissova; Irina Kaverina; Appakalai N Balamurugan; Christopher V E Wright; Yan Li; Roland Stein; Guoqiang Gu
Journal:  Dev Cell       Date:  2020-04-30       Impact factor: 12.270

3.  Determining the fidelity of tRNA aminoacylation via microarrays.

Authors:  Michael H Schwartz; Tao Pan
Journal:  Methods       Date:  2016-09-14       Impact factor: 3.608

Review 4.  Codon-biased translation can be regulated by wobble-base tRNA modification systems during cellular stress responses.

Authors:  Lauren Endres; Peter C Dedon; Thomas J Begley
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 5.  Bacterial transfer RNAs.

Authors:  Jennifer Shepherd; Michael Ibba
Journal:  FEMS Microbiol Rev       Date:  2015-03-21       Impact factor: 16.408

Review 6.  Translational Control under Stress: Reshaping the Translatome.

Authors:  Vivek M Advani; Pavel Ivanov
Journal:  Bioessays       Date:  2019-05       Impact factor: 4.345

7.  Codon misreading tRNAs promote tumor growth in mice.

Authors:  Mafalda Santos; Patricia M Pereira; A Sofia Varanda; Joana Carvalho; Mafalda Azevedo; Denisa D Mateus; Nuno Mendes; Patricia Oliveira; Fábio Trindade; Marta Teixeira Pinto; Renata Bordeira-Carriço; Fátima Carneiro; Rui Vitorino; Carla Oliveira; Manuel A S Santos
Journal:  RNA Biol       Date:  2018-06-07       Impact factor: 4.652

8.  Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation.

Authors:  Ziwei Liu; Oscar Vargas-Rodriguez; Yuki Goto; Eva Maria Novoa; Lluís Ribas de Pouplana; Hiroaki Suga; Karin Musier-Forsyth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

Review 9.  Controlling translation via modulation of tRNA levels.

Authors:  Jeremy E Wilusz
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-04-28       Impact factor: 9.957

10.  Evolutionary Gain of Alanine Mischarging to Noncognate tRNAs with a G4:U69 Base Pair.

Authors:  Litao Sun; Ana Cristina Gomes; Weiwei He; Huihao Zhou; Xiaoyun Wang; David W Pan; Paul Schimmel; Tao Pan; Xiang-Lei Yang
Journal:  J Am Chem Soc       Date:  2016-09-26       Impact factor: 15.419

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