Literature DB >> 22141739

DNA base-specific modulation of microampere transverse edge currents through a metallic graphene nanoribbon with a nanopore.

Kamal K Saha1, Marija Drndić, Branislav K Nikolić.   

Abstract

We study two-terminal devices for DNA sequencing that consist of a metallic graphene nanoribbon with zigzag edges (ZGNR) and a nanopore in its interior through which the DNA molecule is translocated. Using the nonequilibrium Green functions combined with density functional theory, we demonstrate that each of the four DNA n class="Chemical">nucleobases inserted into the nanopore, whose edge carbon atoms are passivated by either hydrogen or nitrogen, will lead to a unique change in the device conductance. Unlike other recent biosensors based on transverse electronic transport through translocated DNA, which utilize small (of the order of pA) tunneling current across a nanogap or a nanopore yielding a poor signal-to-noise ratio, our device concept relies on the fact that in ZGNRs local current density is peaked around the edges so that drilling a nanopore away from the edges will not diminish the conductance. Inserting a nucleobase into the nanopore affects the charge density in the surrounding area, thereby modulating edge conduction currents whose magnitude is of the order of microampere at bias voltage 0.1 V. The proposed biosensors are not limited to ZGNRs and they could be realized with other nanowires supporting transverse edge currents, such as chiral GNRs or wires made of two-dimensional topological insulators.
© 2011 American Chemical Society

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Year:  2011        PMID: 22141739      PMCID: PMC3272331          DOI: 10.1021/nl202870y

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  22 in total

1.  Detection of nucleic acids with graphene nanopores: ab initio characterization of a novel sequencing device.

Authors:  Tammie Nelson; Bo Zhang; Oleg V Prezhdo
Journal:  Nano Lett       Date:  2010-09-08       Impact factor: 11.189

2.  DNA translocation through graphene nanopores.

Authors:  Christopher A Merchant; Ken Healy; Meni Wanunu; Vishva Ray; Neil Peterman; John Bartel; Michael D Fischbein; Kimberly Venta; Zhengtang Luo; A T Charlie Johnson; Marija Drndić
Journal:  Nano Lett       Date:  2010-08-11       Impact factor: 11.189

3.  Identifying single nucleotides by tunnelling current.

Authors:  Makusu Tsutsui; Masateru Taniguchi; Kazumichi Yokota; Tomoji Kawai
Journal:  Nat Nanotechnol       Date:  2010-03-21       Impact factor: 39.213

4.  DNA translocation through graphene nanopores.

Authors:  Grégory F Schneider; Stefan W Kowalczyk; Victor E Calado; Grégory Pandraud; Henny W Zandbergen; Lieven M K Vandersypen; Cees Dekker
Journal:  Nano Lett       Date:  2010-08-11       Impact factor: 11.189

5.  Identifying single bases in a DNA oligomer with electron tunnelling.

Authors:  Shuo Huang; Jin He; Shuai Chang; Peiming Zhang; Feng Liang; Shengqin Li; Michael Tuchband; Alexander Fuhrmann; Robert Ros; Stuart Lindsay
Journal:  Nat Nanotechnol       Date:  2010-11-14       Impact factor: 39.213

Review 6.  Solid-state nanopore technologies for nanopore-based DNA analysis.

Authors:  Ken Healy; Birgitta Schiedt; Alan P Morrison
Journal:  Nanomedicine (Lond)       Date:  2007-12       Impact factor: 5.307

7.  Rapid sequencing of individual DNA molecules in graphene nanogaps.

Authors:  Henk W Ch Postma
Journal:  Nano Lett       Date:  2010-02-10       Impact factor: 11.189

8.  Effect of noise on DNA sequencing via transverse electronic transport.

Authors:  Matt Krems; Michael Zwolak; Yuriy V Pershin; Massimiliano Di Ventra
Journal:  Biophys J       Date:  2009-10-07       Impact factor: 4.033

9.  Atomically precise bottom-up fabrication of graphene nanoribbons.

Authors:  Jinming Cai; Pascal Ruffieux; Rached Jaafar; Marco Bieri; Thomas Braun; Stephan Blankenburg; Matthias Muoth; Ari P Seitsonen; Moussa Saleh; Xinliang Feng; Klaus Müllen; Roman Fasel
Journal:  Nature       Date:  2010-07-22       Impact factor: 49.962

10.  Graphene as a subnanometre trans-electrode membrane.

Authors:  S Garaj; W Hubbard; A Reina; J Kong; D Branton; J A Golovchenko
Journal:  Nature       Date:  2010-08-18       Impact factor: 49.962

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  46 in total

Review 1.  Decoding DNA, RNA and peptides with quantum tunnelling.

Authors:  Massimiliano Di Ventra; Masateru Taniguchi
Journal:  Nat Nanotechnol       Date:  2016-02       Impact factor: 39.213

2.  Material witness: Improving pore performance.

Authors:  Philip Ball
Journal:  Nat Mater       Date:  2013-11       Impact factor: 43.841

Review 3.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

Review 4.  Modeling and simulation of ion channels.

Authors:  Christopher Maffeo; Swati Bhattacharya; Jejoong Yoo; David Wells; Aleksei Aksimentiev
Journal:  Chem Rev       Date:  2012-10-04       Impact factor: 60.622

5.  DNA sequence-dependent ionic currents in ultra-small solid-state nanopores.

Authors:  Jeffrey Comer; Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2016-05-05       Impact factor: 7.790

6.  Graphene Nanopores for Protein Sequencing.

Authors:  James Wilson; Leila Sloman; Zhiren He; Aleksei Aksimentiev
Journal:  Adv Funct Mater       Date:  2016-06-09       Impact factor: 18.808

7.  Tunable graphene quantum point contact transistor for DNA detection and characterization.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  Nanotechnology       Date:  2015-03-13       Impact factor: 3.874

8.  Electrochemistry at the edge of a single graphene layer in a nanopore.

Authors:  Shouvik Banerjee; Jiwook Shim; Jose Rivera; Xiaozhong Jin; David Estrada; Vita Solovyeva; Xueqiu You; James Pak; Eric Pop; Narayana Aluru; Rashid Bashir
Journal:  ACS Nano       Date:  2012-12-28       Impact factor: 15.881

9.  Tip-Based Nanofabrication of Arbitrary Shapes of Graphene Nanoribbons for Device Applications.

Authors:  Huan Hu; Shouvik Banerjee; David Estrada; Rashid Bashir; William P King
Journal:  RSC Adv       Date:  2015-04-15       Impact factor: 3.361

10.  Surface modification of graphene nanopores for protein translocation.

Authors:  Y P Shan; P B Tiwari; P Krishnakumar; I Vlassiouk; W Z Li; X W Wang; Y Darici; S M Lindsay; H D Wang; S Smirnov; J He
Journal:  Nanotechnology       Date:  2013-11-14       Impact factor: 3.874

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